Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0418 ATGGCATATGGCGAGAAAAAATCTGAAGTGATGATATTATCAAATAATCTATGTTTTACTGTTAGCCATAAATTTAAAGAGTTGCCTGCTGATGGTTTTGGCTGTGTTCTACACTCGAAAAGTTGGGTCAGGGAGAGCGCTCTTTGCTTGTCTCATTCGTCTTTCGGCTTCAACGAGGACTTAACAATGATGGAAGATGATAAGAAGAACAAGAAGGTCGCTTTTAGCGAGGAAGACACTGCTGCTCTCTTAGAGAAGTATGATGCAATCACCACTCTAACTTTACTTCAGGAAGTGTCAAATTTAAATTATCCTGAGGGCAAGATTGATTGGAATGAGTTGGTAAAAATTACAGCAACTGGGATATCAAATGCTCGAGAGTGTCAGATGTTATGGCGTCATCTTGCGTATCGTGATGACTTGACTGAAAATTTGGAAGACGGTGCTGAACCTCTGGACGATGATAGTGACTTGGACTGTGAGATGGAAGTGGTACCCCCTATAAACAATGAGGCCGCATCGGAGGCTTCAGCTTGTGTGAAGGTTATGATAGCTTCTGGTTCGCTTAGTGAAAGAGGTCCTAGTAGCTTAACAATTGAGGCTCCGATGACCATAAATATTCCAAACTGTCATTCATTTACAAATCCTGAGGAAAATATACAGCCCTCAAACTTGAAACAAGGAACAAGTATTGTTTTTCCTGTTACTGTTCAGAGACAGACTCTACCAACTGGATCTGTGACTGAAGGTGTAGAAACCAAGGGAATAACCGGTGGCAAATTGTCTTCCAAAAGGAGAAGAAAGCCATGGTCAGAAGAAGAGGACAAGCAACTACGAGCGGCTGTTCAGAAATGTGGTGAGGGAAATTGGGCAACCATGGCAAAAGGAGATGACTTCCCTATCAAAAGAAGTCCTACACAGTTGGCTCAGAGGTGGAGCATTTTACGAAAGAAAGATGGCACTACAAGTTCAGGAATGAACTTGACCAGCTCACAGTTTACTGCTGAACAACTGGCAACTCGTCACTCGTTATCTTTAGCCCTTGATATGCCATTAAAAAAATTAACTGCTCCTGGAACAACTGACCCTGTTGCAGCTAGGACGTCATTAAATGCATCAATTAAGAACGTTGTGCAACCTATTAATACTGCTGAAGCTTCAACAGTTCAGAGCAGCTCTGTGCCACCTCAGCTTCCATCTCAACAAGCTGCGTTGGGTCCTTCTGCTTCCCTGTCAAATTCTTTCGTCCCTGAAAGAACAATGCTGAAGTCTAATACAAGTGCGGATGCTGCTGTAAGAGCTACTGCAGTTGCAGTTGGTGCGCGTATTGTCTCCTCGGCAGATATTTTGTCAATGCAAAAGGCTACTCAGGACAGAAGCGCCGGACAAGTTATTTCCACAGGAAGTTCTTCAATGAAGCTGTCCGCATCTGCTGGCTCTATTACCCACCCAGAAGTTCTTCTAAATCCAGCTGTTTCTCCTAAAGCTGTTGCCACTACACCTTCTTGCACTACTGCTGTTAAATCTGTCTCCCCATCGGGTGAGAGTACTTCTAATGCCCATAGCTCGGTGGTTAATAATCTTACCCTGGAGCAAGTTAATCCTAACCAAGAATCCAAAGTCTCTGATTCTAGTGTTGAAACAAAAGAGAGGGACCAAGTTGATGAGGCACCAGTCACGAAACGTATACCTGATGAGGAGGTTTTAGAAAATAAACCAGTTTCACAAAATCCAGTAGAGCTTGATGAGCAGGGAGTAGTTTGA 1764 0.4331 MAYGEKKSEVMILSNNLCFTVSHKFKELPADGFGCVLHSKSWVRESALCLSHSSFGFNEDLTMMEDDKKNKKVAFSEEDTAALLEKYDAITTLTLLQEVSNLNYPEGKIDWNELVKITATGISNARECQMLWRHLAYRDDLTENLEDGAEPLDDDSDLDCEMEVVPPINNEAASEASACVKVMIASGSLSERGPSSLTIEAPMTINIPNCHSFTNPEENIQPSNLKQGTSIVFPVTVQRQTLPTGSVTEGVETKGITGGKLSSKRRRKPWSEEEDKQLRAAVQKCGEGNWATMAKGDDFPIKRSPTQLAQRWSILRKKDGTTSSGMNLTSSQFTAEQLATRHSLSLALDMPLKKLTAPGTTDPVAARTSLNASIKNVVQPINTAEASTVQSSSVPPQLPSQQAALGPSASLSNSFVPERTMLKSNTSADAAVRATAVAVGARIVSSADILSMQKATQDRSAGQVISTGSSSMKLSASAGSITHPEVLLNPAVSPKAVATTPSCTTAVKSVSPSGESTSNAHSSVVNNLTLEQVNPNQESKVSDSSVETKERDQVDEAPVTKRIPDEEVLENKPVSQNPVELDEQGVV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0418 587 Pfam Myb-like DNA-binding domain 267 312 IPR001005 -
Lele25g0418 587 SMART sant 266 318 IPR001005 -
Lele25g0418 587 ProSiteProfiles Myb-like domain profile. 262 316 IPR001005 -
Lele25g0418 587 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 63 572 - -
Lele25g0418 587 MobiDBLite consensus disorder prediction 529 587 - -
Lele25g0418 587 MobiDBLite consensus disorder prediction 543 569 - -
Lele25g0418 587 MobiDBLite consensus disorder prediction 248 275 - -
Lele25g0418 587 MobiDBLite consensus disorder prediction 388 411 - -
Lele25g0418 587 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 262 320 IPR017930 -
Lele25g0418 587 CDD SANT_TRF 268 317 - -
Lele25g0418 587 Gene3D - 260 322 - -
Lele25g0418 587 SUPERFAMILY Homeodomain-like 265 318 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0418 Lele-ChrLele25 2546711 2553627 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele25g0418 Myb_DNA-binding 2e-09 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0418 25 2546711 2553627 Lele27g1666 27 22153571 22161032 hybridization
Lele25g0418 25 2546711 2553627 Lele28g0427 28 2639825 2648910 hybridization