Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0412 ATGGGTGGTGCCCTCTCTTTCAACCCATCCACCAGATTTTTCTTATTCTTCTTCCTCTTCCACACCACAATCATATTCCTTCCAGGGTCTGCTGCTGCTGAAATCCCATCTTCTCCTTTGGCTCTGACCGTTCATGACAACGGCTCGGGAAAAAATCCGCCTCCTCCTCCTCCGCCGCCGCCGGCGGGAAGTCAACGTGGCGGAGGAGGGAGAGGGTCTCCTTTTAAGCCGAGCGTGGTAGTTCTAATTGGTGTATTGACGACCCTGTTTTTTCTTACTTTTCTCCTTCTTCTCTATGTTAAACACTGTAAACCAGAGGAGGAGCCCCTGAGGAATTCACGTACAAGCGCGGGCGGCTATTCGGGGAGGAAGAACTCCGGCATTGACCGAACGGTGATCGAGTCGTTACCAATTTTTAGATTCGGATCGTTAAGTGGCCAAAAGGAGGGGCTAGAATGCGCCGTTTGCCTGACCCGGTTTGAGACCGTGGAGGTTCTTCGGTTGCTTCCAAAATGCAAGCACGCCTTCCATGTCGAATGTGTGGATACGTGGTTGGACGCGCATTCCACTTGCCCGCTTTGCCGGTACCGGGTCGACCCAGAAGACATTCTCCTGGTTGGGGATGCTAAAGTTTGGCCGCAGAATCACCCCATTCCACCGATACAAGAGATCTCCGAAAATCCGCAGCATTGTACAGACATAGAGAGTGGACTGGGACCGGATTCACAGAATTGGTCGGATTCAAACTCAATTCTCCGGCGAGTCTCCGGGAGGCACTCATCCGTAGGGGAAAGAGGAGGAGGAGGAGCTGGTAGTAGTGGGTTCTTAAGGATCATATTGCAGCATCGAATCAGCGTGGACGGCGAAACGACGCCGACGCCGCGGCAGAAGAAAACGGCGCCGGTTAGGATGTCACTGGACAGTGCAATGGCGACGAAGAGGAAAAGAAACGAGACCGGAAAAGAAAGATCGGAAGGTAGTGAGTGTGATGGTCAAAGAAAAGACGGGTTACTGCTGACGGAGAAGGAGAAGAAGCACAGGTTAGAACACAGGATCATAGTGTCTCCGTTTCAAAAGCCCAATGTGCTTCATCAGAGATGGAGCGATGTACAGCCGTCGGACTTACTCTACCTGACGTCGGAGATGATACTGCGCGAATCGTGTTCCTCATCGGGGCCGTCGCTTTCAGGGCGGCAGCTGCAGCAACAGAATATGCAGCTGCCACCGTACCCGAGCAGAGGAGAGAACCGTACGGAGGCAATAAATGCGAGAAGCTTGTCGGAAATCACGGGATTGAGCCGAAGGAGGAGAGAGGAAAGAGAGCACCGTCGGGCAGAGGAAGAAGAGAGACAAGCGGGAGTAGTATCGAGGTGGCTGGCCTGGATCTCTCAGTCACAACGATCTGTACGGTAG 1413 0.5315 MGGALSFNPSTRFFLFFFLFHTTIIFLPGSAAAEIPSSPLALTVHDNGSGKNPPPPPPPPPAGSQRGGGGRGSPFKPSVVVLIGVLTTLFFLTFLLLLYVKHCKPEEEPLRNSRTSAGGYSGRKNSGIDRTVIESLPIFRFGSLSGQKEGLECAVCLTRFETVEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVGDAKVWPQNHPIPPIQEISENPQHCTDIESGLGPDSQNWSDSNSILRRVSGRHSSVGERGGGGAGSSGFLRIILQHRISVDGETTPTPRQKKTAPVRMSLDSAMATKRKRNETGKERSEGSECDGQRKDGLLLTEKEKKHRLEHRIIVSPFQKPNVLHQRWSDVQPSDLLYLTSEMILRESCSSSGPSLSGRQLQQQNMQLPPYPSRGENRTEAINARSLSEITGLSRRRREEREHRRAEEEERQAGVVSRWLAWISQSQRSVR 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0412 470 FunFam RING-H2 finger protein ATL43 128 202 - -
Lele25g0412 470 MobiDBLite consensus disorder prediction 286 332 - -
Lele25g0412 470 MobiDBLite consensus disorder prediction 309 332 - -
Lele25g0412 470 Pfam Ring finger domain 152 195 IPR001841 -
Lele25g0412 470 MobiDBLite consensus disorder prediction 42 72 - -
Lele25g0412 470 SUPERFAMILY RING/U-box 132 200 - -
Lele25g0412 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 202 IPR013083 -
Lele25g0412 470 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Lele25g0412 470 MobiDBLite consensus disorder prediction 407 452 - -
Lele25g0412 470 MobiDBLite consensus disorder prediction 50 64 - -
Lele25g0412 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 57 465 - -
Lele25g0412 470 SMART ring_2 153 194 IPR001841 -
Lele25g0412 470 MobiDBLite consensus disorder prediction 430 452 - -
Lele25g0412 470 CDD RING-H2_EL5_like 152 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0412 Lele-ChrLele25 2500308 2501720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0412 73 461 C3H Transcription Factor Family AT5G05810 45.742 1.49e-86 269