Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0411 ATGCTCAAGAGGACTGGGACAGTAGAAGAAAGTCATGGACGAGTGGGGGAAGATGTGGGACCTATGACACAGAAAATAATGGAGTTTCGAAAATCTGCTATGGAAGCCTTACATAGGAAGGGTCAATAACCAATTAGCCTTATGGGCTACAAAAACACTGCGGTAGACATCATGGAACAGATCGACTACAAGTTTTACAGGAAACTCTTTGAAGATAATAAGTCGCAAGTGCAAGGATGGGGTCTCCATAGTTACGTACTATACATGTTCTCATTCACTGTGAGCCTCCGGACATGCTCATTGCTCTGTGGATACGTCAACATCAGATATGGCATATCAAGAATGAGGCAAATAATGAATCAGCGTGCAGCTGTAGCTTGTTCTTGGGGATTTGCAAAAATACAGAGGCTTGTGCATTATACTGGTTGCTGCACCGCAGAATGCCCTAGTTACTCTGATGATCTGATCTGCGGCCCTCGCCCTCTCAGGAGTTTCTGTGGCTTTGAGAGCTGGTTAGATCAGAGCGCGCATTCTCAGAAACCCACCTCGTCCTTCAAGTCCATGGAATTGGATAACGGCAAACCAATTCTCAACTCCACTTCTAAGTCTGAGAGGAAATCAATGGAAGCATGCAAGAGCCATAGAGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACTCCCACCTCTCCACTCTACGTTCTCTCCTCCCTAACGCCGTAAAGTCGGATAAGGCCTCGTTGCTAGCGGAGGTGGTCCGACGCGTCAAATACCTGAGGAAACAGGCCGAGGACGTGGGGCGCCTTCACGACGGAAACTTGTCGGGAAGCACTGCCAGCGGAGAATCTGGGTCGGATCCCGCAGACTCGGAGCAGTGGGCGTTGCCGGGAGAGTCGGACGAGGCGACCGTGAGTTACTGCGACGGAGATGGGGAGAGTAAACTCATGAAAGCCACGCTCTGCTGCGAGGCCCGGCCCAACCTGAACCGAGATCTGGAGGAGGCGATCCGGACGATTCGGGCTAAGGCGGTGCGAGCCGAGATGATGACAATTGGTGGGCGGACCAAGAGTGTGGTGATTGTCCAATGGACTGGGGGAGAAGACGAGGTTGGAGCACTAGAACAGGCTTTGGCTGCTGTCGTAGAGAATCGGGCCCTCGTAGGGCCCAAACTGGGCCGGATGAGGTTGGGCCACAAACGGGCCCGACATTGTTACGGCTTACCCAACTAG 1227 0.5232 MLKRTGTVEESHGRVGEDVGPMTQKIMEFRKSAMEALHRKGQXPISLMGYKNTAVDIMEQIDYKFYRKLFEDNKSQVQGWGLHSYVLYMFSFTVSLRTCSLLCGYVNIRYGISRMRQIMNQRAAVACSWGFAKIQRLVHYTGCCTAECPSYSDDLICGPRPLRSFCGFESWLDQSAHSQKPTSSFKSMELDNGKPILNSTSKSERKSMEACKSHREAERRRRQRINSHLSTLRSLLPNAVKSDKASLLAEVVRRVKYLRKQAEDVGRLHDGNLSGSTASGESGSDPADSEQWALPGESDEATVSYCDGDGESKLMKATLCCEARPNLNRDLEEAIRTIRAKAVRAEMMTIGGRTKSVVIVQWTGGEDEVGALEQALAAVVENRALVGPKLGRMRLGHKRARHCYGLPN 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0411 408 MobiDBLite consensus disorder prediction 182 221 - -
Lele25g0411 408 Coils Coil 328 348 - -
Lele25g0411 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Lele25g0411 408 MobiDBLite consensus disorder prediction 182 204 - -
Lele25g0411 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 267 IPR036638 GO:0046983
Lele25g0411 408 PANTHER TRANSCRIPTION FACTOR BHLH30 185 401 IPR045847 GO:0003700|GO:0006355
Lele25g0411 408 Gene3D - 203 268 IPR036638 GO:0046983
Lele25g0411 408 SMART finulus 215 264 IPR011598 GO:0046983
Lele25g0411 408 MobiDBLite consensus disorder prediction 268 293 - -
Lele25g0411 408 MobiDBLite consensus disorder prediction 272 286 - -
Lele25g0411 408 MobiDBLite consensus disorder prediction 205 221 - -
Lele25g0411 408 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0411 Lele-ChrLele25 2492994 2499448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0411 206 381 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.642 3.18e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g0411 HLH 1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0411 25 2492994 2499448 Lele27g1676 27 22213715 22215208 hybridization
Lele25g0411 25 2492994 2499448 Lele28g0420 28 2595578 2597703 hybridization