Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0391 ATGGAATCTGAGGAGCACGACGAGCAGGACGACGACGTCCAGATCCCGGCGTCGCCTCCTGCTTATTATGACTCCCTCCCCAACAACTCTGTCCCCAGGTCCAAAATAAGCTTCTCCGGAGGAGGAGAGGGTGGCGCCTCAGCGGTCACGCCTGGCCGTAAAGCTGAGCCCTCAGTGACGGCCAGGTACCGGGAATGCCAAAAGAACCACGCGGTAAGCCTCGGCTCACACGCGGTCGACGGCTGCGGAGAGTTCATCGCGGCGGGAGAGGAAGGCACGCTCGACGCTCTAAAATGCGCCGCCTGTAACTGTCACCGCAATTTCCACCGTAAGGAGACAGACGGCGGGGACATGACGCCGTATCAGCAGCCGCCGCCGCCGCCGCATTACCAGTACCACCAGCAGTATCCACCATACTACCGTGCGCCTCCGCCACCAGCTGGATACCTGCACCATCACCTGACGGCTCAGCCGATGGCGCTGCAGCGGTCGTTGGCTCTGCCGGCTCCGGTGCCGATTAGAGATGAAGAGGACATGTCAAATCCGAGCAGCAGCGGAGGCGGCGGCAGTGGAGGTGGGGGAGGGAAGAAAAGGCACAGGACGAAGTTCACGCAGGAGCAGAAGGATAAGATGCTGGCATTCGCGGAGCATGTCGGGTGGAGAATCCAGAAGCATGATGAAGCTGCGGTGGAGCAATTCTGTGCTGAGAACTGTGTCAAGAGACATGTACTTAAGGTTTGGATGCACAATAACAAGAGCATTCTTGCGTCACAGATCACAGGCACTGTCTTGCAGATGTGCAGGCTCTTCTGA 813 0.5904 MESEEHDEQDDDVQIPASPPAYYDSLPNNSVPRSKISFSGGGEGGASAVTPGRKAEPSVTARYRECQKNHAVSLGSHAVDGCGEFIAAGEEGTLDALKCAACNCHRNFHRKETDGGDMTPYQQPPPPPHYQYHQQYPPYYRAPPPPAGYLHHHLTAQPMALQRSLALPAPVPIRDEEDMSNPSSSGGGGSGGGGGKKRHRTKFTQEQKDKMLAFAEHVGWRIQKHDEAAVEQFCAENCVKRHVLKVWMHNNKSILASQITGTVLQMCRLF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0391 270 MobiDBLite consensus disorder prediction 1 56 - -
Lele25g0391 270 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 112 IPR006456 -
Lele25g0391 270 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 50 253 - -
Lele25g0391 270 Gene3D - 181 258 - -
Lele25g0391 270 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 252 IPR006455 -
Lele25g0391 270 Pfam ZF-HD protein dimerisation region 61 113 IPR006456 -
Lele25g0391 270 FunFam Zinc-finger homeodomain protein 2 185 257 - -
Lele25g0391 270 MobiDBLite consensus disorder prediction 173 202 - -
Lele25g0391 270 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 112 IPR006456 -
Lele25g0391 270 SUPERFAMILY Homeodomain-like 183 252 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0391 Lele-ChrLele25 2368538 2370330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0391 7 255 ZF-HD Transcription Factor Family AT4G24660 49.020 4.65e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele25g0391 ZF-HD_dimer 4.5e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0391 25 2368538 2370330 Lele27g1693 27 22331771 22333176 hybridization
Lele25g0391 25 2368538 2370330 Lele28g0400 28 2450074 2450817 hybridization