Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0383 ATGGCGGCCAATTCGCACAGTGGCGGTTCTTTCTACGGTGACGCGGCGCCTTACAGATCCAGACAAGGGCTTAGCACGAGACCGGTGGCTGGTTCCGATGAAATCCAATTGAGCATCGATCCGATGGACTTGGACAATGAGATCAGCGGTCTGCACGGCCAAGTTAGAAGGTTGCGACATGTTGCTGAGGAGATAGGAACAGAAGTGAGATATCAGAAAGATTTTTTGGAACAACTGCAAATGACAATGATAAAGGCTCAAGCTGGGGTGAAGAATAATTTGCGAAGATTGAACAAGAGCATCATTCAAAACGGTTCAAGTCATATTCTTCATGTTATTGTTTTTGCATTGGTGTGTTTCTTTATTGTGTACTTGTGGTCTAAAATGTCCAGAAAATGA 399 0.4436 MAANSHSGGSFYGDAAPYRSRQGLSTRPVAGSDEIQLSIDPMDLDNEISGLHGQVRRLRHVAEEIGTEVRYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQNGSSHILHVIVFALVCFFIVYLWSKMSRK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0383 132 CDD SNARE_Qc 43 99 - -
Lele25g0383 132 SUPERFAMILY SNARE fusion complex 42 99 - -
Lele25g0383 132 Gene3D - 43 100 - -
Lele25g0383 132 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 45 100 IPR000727 -
Lele25g0383 132 FunFam Bet1-like protein At4g14600 44 102 - -
Lele25g0383 132 PANTHER GOLGI SNARE BET1-RELATED 18 128 IPR039897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0383 Lele-ChrLele25 2331439 2333437 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0414 01 2421629 2423326 Lele25g0383 25 2331439 2333437 CCT
Lele02g0410 02 2383300 2384995 Lele25g0383 25 2331439 2333437 CCT
Lele03g0426 03 2425560 2427258 Lele25g0383 25 2331439 2333437 CCT
Lele04g0418 04 2478490 2480719 Lele25g0383 25 2331439 2333437 CCT
Lele25g0383 25 2331439 2333437 Lele27g1700 27 22378399 22380431 hybridization
Lele25g0383 25 2331439 2333437 Lele28g0393 28 2413806 2415460 hybridization