Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0375 ATGAAACATACAATCTTTTCTTCCCTTCTTCCACAGTTCAAACAAAAACTCGTCCCTTTGACTCTGTCATCCTGTGGGCACTCATATCTCCTCCTATTTCATCATTCTTGCTTCTTTGTTCTCTGTCATTTCATTCTCCTGGGCTTGTACGTGATCAAAACCAAGTGTTACGCTAGTTGGTGTGTCTGGAGACACAATGGATCCCAATTAGAGACCTCAGACCAAGAGTTTCTTGACGAGAACCAAGTTGATCCCCCTGTCTGGTTTATCACCACCGCCGGTCTGCAACAGTCGATTATAAACTCCATCACAGTTTGTAGGTATAAAAGGGGTGATGGGTTGATCGAAGGAACCGAGTGTTCAGTGTGTTTGAACGAATTTCGGGAAGATGAAACCTTGAGGCTCTTGCCCAAATGCAGCCATGCCTTTCACATACCCTGTATTGACACTTGGTTGCGTTCTCATACCAATTGTCCTCTCTGTCGTGCTGGGATCGTCCTGAACAATGTCAGACCTGAGGCTGCCGTGTCAAATTTGGCTTCAACGGAGCTAAACTCTGACAATTTACGTAGGAACCACGAGATTCAAACTGAGAATTCGCCAAATGATGGTGAAGTAAACAACAGTGAGCTGGTAATTGCAAATGAGGCATCTGGAAACAGAGCTGGAACAGTGGAAACCCAAGAATTGAACGGTAATTTGGTTTCAAAGCAGCACGCGAATGTTGTACTCAATGGTGCAAAAGAGGATCATGAGGTTTTGAATGAAGGGAAGCGAATTGAGATAAGGTCTATGTCTATGGATTCTAGACTGGCAAATTCTTCTGCTTCGGAACATGAAGAAAGCCATCCAATTTTTAGAGGAATTCGGCGTTCCTCTGTTTCAAAATGTCTGCCTCTGAGCCCTGTTCCTATGAAGAGGTCGTTATCTTGCAGGGGAAGGATTCTATCTGGCTGGGATCACAGGAATCTACATACAAGTCTTCCTTATTAG 993 0.4421 MKHTIFSSLLPQFKQKLVPLTLSSCGHSYLLLFHHSCFFVLCHFILLGLYVIKTKCYASWCVWRHNGSQLETSDQEFLDENQVDPPVWFITTAGLQQSIINSITVCRYKRGDGLIEGTECSVCLNEFREDETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAGIVLNNVRPEAAVSNLASTELNSDNLRRNHEIQTENSPNDGEVNNSELVIANEASGNRAGTVETQELNGNLVSKQHANVVLNGAKEDHEVLNEGKRIEIRSMSMDSRLANSSASEHEESHPIFRGIRRSSVSKCLPLSPVPMKRSLSCRGRILSGWDHRNLHTSLPY 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0375 330 FunFam RING-H2 finger protein ATL54 95 168 - -
Lele25g0375 330 PANTHER RING-H2 FINGER PROTEIN ATL16 42 289 IPR044600 GO:0016567|GO:0016740
Lele25g0375 330 CDD RING-H2_PA-TM-RING 119 162 - -
Lele25g0375 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 168 IPR013083 -
Lele25g0375 330 SUPERFAMILY RING/U-box 114 168 - -
Lele25g0375 330 SMART ring_2 120 161 IPR001841 -
Lele25g0375 330 Pfam Ring finger domain 119 162 IPR001841 -
Lele25g0375 330 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0375 Lele-ChrLele25 2284606 2285790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0375 38 170 C3H Transcription Factor Family AT1G72220 59.398 6.42e-49 167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0375 25 2284606 2285790 Lele27g1708 27 22436405 22437493 hybridization
Lele25g0375 25 2284606 2285790 Lele28g0385 28 2368290 2369384 hybridization