Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0373 ATGGCCCTGCCGGCGCTGGCCAAGGTCTACACCGTTGGAGACTCCTCTGGTTGGGCCATCGGTGCTGATTATGGCACCTGGGCTAGTGGAAAAACCTTCCAAGTCGGCGATTCTCTCGTGTTTAACTATGGAGCGGGGCACACAGTGAATGAAGTTAAAGAGAGTGACTACAAATCCTGCACTACCGGCAATTCACTTTCTACAGACAGCAGCGGAGCCACCACCATTGCCCTCAAGACCGCCGGCCCTCACTACTTCGTATGTGCAGTTCCTGGACATTGCAGTGGTGGCATGAAGCTTTCTGTTGATGTTAAGGCCGGAAAAGCCTCCGCTCCCTCTGCAACGCCTTCCTCCGGGAAGGGTTCGCCTGCCAGTGATACCCCAACCACCCCGTCCTCCTCCACCACCCCCACCACTCCATCCTCTACGGCATCTTCTTCTTCGGCCGCTAGACTTTCGCTGGTTATTTCTATGCTGACTGTTTCTTGGGTTTCATACTGGGCATTGCGCCTGTTATGA 519 0.5491 MALPALAKVYTVGDSSGWAIGADYGTWASGKTFQVGDSLVFNYGAGHTVNEVKESDYKSCTTGNSLSTDSSGATTIALKTAGPHYFVCAVPGHCSGGMKLSVDVKAGKASAPSATPSSGKGSPASDTPTTPSSSTTPTTPSSTASSSSAARLSLVISMLTVSWVSYWALRLL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0373 172 Gene3D - 6 111 IPR008972 -
Lele25g0373 172 SUPERFAMILY Cupredoxins 7 104 IPR008972 -
Lele25g0373 172 MobiDBLite consensus disorder prediction 109 145 - -
Lele25g0373 172 PANTHER BLUE COPPER PROTEIN 8 131 IPR039391 GO:0009055
Lele25g0373 172 CDD Phytocyanin 8 104 - -
Lele25g0373 172 Pfam Plastocyanin-like domain 18 98 IPR003245 GO:0009055
Lele25g0373 172 FunFam Blue copper 6 110 - -
Lele25g0373 172 ProSitePatterns Type-1 copper (blue) proteins signature. 82 98 IPR028871 -
Lele25g0373 172 MobiDBLite consensus disorder prediction 111 145 - -
Lele25g0373 172 ProSiteProfiles Phytocyanin domain profile. 8 106 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0373 Lele-ChrLele25 2273032 2273647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0373 18 104 Miscellaneous Gene Families AT1G22480 66.667 5.57e-37 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0401 01 2359184 2363065 Lele25g0373 25 2273032 2273647 CCT
Lele02g0399 02 2337143 2340631 Lele25g0373 25 2273032 2273647 CCT
Lele03g0412 03 2365211 2369117 Lele25g0373 25 2273032 2273647 CCT
Lele04g0407 04 2425713 2430601 Lele25g0373 25 2273032 2273647 CCT
Lele25g0373 25 2273032 2273647 Lele27g1712 27 22447859 22453014 hybridization