Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0342 ATGTTCAAGAAGTCTGAGAAAAATATGGGCAACGCAGAGAACAACATGAAGAGAGATGAAGTGTTAGGAACGTGGTGGAATGGCTTTCCAAACACATCATATCCCAATCTTCATCATTGCCAGCGTCACAATGAGCATTTGTTCCCATCGTCAGCTCCATTTCAGGACAGGAAGCATCTAACACCCCATGATCACCACTCAACTAAATTGTTGTTGGACCCCGAGTCATCGGATTTCCATATCCGGAAGAATATCATTGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAATATTATAGACGGACAGGGAAATGGTAACAAAACAAAGGCACCTGAAGCGGACTCCTACCGATTTGGATTCGACACTTTTTCTTTCGATATAAATACTCCCGGCGTTAATGAAACACGGAGCTCCTATGAAGATTTTTGCATTGAAATTCCTGCACCTAATTATGAGTGTCTCTCATCATCTACTTGGGGAGTTTCACCGAGTCTGGTCGCTGATATGAAGTGGGCTAACCATACCGAGGAGAAAGGATACACTTCTTCCCTCGCACATTGTCAGCCCAGTGCTTTGAATTTGTGCTGTGATTGGAACGTGAACCAAACATATCGTCAATTGGAGCACAGCAAGAGTAGCTATGATGGAGAAGTTCAACTGCAGAAGCCATCTATCATCAACCCCTTCCTTTGTGATGATAATGTTGTTGAACTCATGATGGACCCTTTTGGTAACTATCTTGTGCAGAAGTTGCTGGATGTGTGTAGAGAAGAACAGAAATTGCAGATTGTTTCCAGGGTGACTAAAGAACCAGGGCAGCTCGTCAGAATATCTTTAAACACGCATGGGAAACAAATTTCATTAGTGAAGTCAGCCCTTCAATCAGGTTTTCTTAATCTTATTAAGGATCTTAATGGAAATCATGTGATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGCCTTGCAGGCACCGAATATTTCTTGGAAATTACCTTTTAAGTGCCTCTGAAAATAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGTTGTGTATTGCAACGTTGCATTGATCATTCAATCGGAAATATCGAGATAAGCTGCAGATCAAGGATCGTCCGAGAAATGATGTCTTCAACTCACTTCGAACGGTTGTTGCAAGATCCATATGCCAATTATTTCATTCAGTCTGCTCTAACACTGACGAAGGGTTCACTTCATACATCTTTGGTTGAAGCAGTTCGTCCTTACAAAATCTTGCGCACCACCCGTATTGCAAGAGGGTTTTCTCGGGAAATCTACTCAAGAAGTAATAATGTCCGACAGCCACAAAAAAAATGTTGTTCTCGATATCAACTTGATGGTTATATTTTGATGAATGATATATTTGTGTTTCTTAAGTTTGGACTTGGAGCGCTAGGTATGCTGAGATCAATCACCAGGCTATACGATTACCTTTGCGTTAACCATTGCTTTCACAGTGTCCCCCGTCGCCACGAGATTGACGCTATTATTCAAGATCTCTCCATTGTATTGGATTTTAGTCTTTCGAATCTTTGTGCATCAGATATAGTTAAACTAGCAAGCATTACATCAAAACTACATCCGAAATGA 1644 0.41 MFKKSEKNMGNAENNMKRDEVLGTWWNGFPNTSYPNLHHCQRHNEHLFPSSAPFQDRKHLTPHDHHSTKLLLDPESSDFHIRKNIIDNQVVDLDLSRDFYRMNIIDGQGNGNKTKAPEADSYRFGFDTFSFDINTPGVNETRSSYEDFCIEIPAPNYECLSSSTWGVSPSLVADMKWANHTEEKGYTSSLAHCQPSALNLCCDWNVNQTYRQLEHSKSSYDGEVQLQKPSIINPFLCDDNVVELMMDPFGNYLVQKLLDVCREEQKLQIVSRVTKEPGQLVRISLNTHGKQISLVKSALQSGFLNLIKDLNGNHVIQRCLQCLSCQDNEPCRHRIFLGNYLLSASENKFCVDIATHRHGCCVLQRCIDHSIGNIEISCRSRIVREMMSSTHFERLLQDPYANYFIQSALTLTKGSLHTSLVEAVRPYKILRTTRIARGFSREIYSRSNNVRQPQKKCCSRYQLDGYILMNDIFVFLKFGLGALGMLRSITRLYDYLCVNHCFHSVPRRHEIDAIIQDLSIVLDFSLSNLCASDIVKLASITSKLHPK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0342 547 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 167 547 IPR033133 GO:0003723
Lele25g0342 547 Gene3D - 377 457 IPR011989 -
Lele25g0342 547 Gene3D - 210 376 IPR011989 -
Lele25g0342 547 ProSiteProfiles Pumilio RNA-binding repeat profile. 234 271 IPR001313 GO:0003723
Lele25g0342 547 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 221 426 - -
Lele25g0342 547 SMART pum_5 298 333 IPR001313 GO:0003723
Lele25g0342 547 SMART pum_5 236 271 IPR001313 GO:0003723
Lele25g0342 547 SMART pum_5 387 422 IPR001313 GO:0003723
Lele25g0342 547 SMART pum_5 345 379 IPR001313 GO:0003723
Lele25g0342 547 SUPERFAMILY ARM repeat 239 428 IPR016024 -
Lele25g0342 547 ProSiteProfiles Pumilio RNA-binding repeat profile. 385 422 IPR001313 GO:0003723
Lele25g0342 547 Pfam Pumilio-family RNA binding repeat 240 273 IPR001313 GO:0003723
Lele25g0342 547 Pfam Pumilio-family RNA binding repeat 350 370 IPR001313 GO:0003723
Lele25g0342 547 Pfam Pumilio-family RNA binding repeat 303 325 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0342 Lele-ChrLele25 2089314 2094486 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0342 25 2089314 2094486 Lele01g0397 01 2332014 2334879 CCT
Lele25g0342 25 2089314 2094486 Lele02g0394 02 2310522 2313509 CCT
Lele25g0342 25 2089314 2094486 Lele03g0407 03 2340990 2343932 CCT
Lele25g0342 25 2089314 2094486 Lele04g0402 04 2400238 2403376 CCT
Lele01g0374 01 2170894 2175718 Lele25g0342 25 2089314 2094486 CCT
Lele02g0369 02 2143236 2150210 Lele25g0342 25 2089314 2094486 CCT
Lele03g0380 03 2192833 2203776 Lele25g0342 25 2089314 2094486 CCT
Lele04g0377 04 2228733 2239314 Lele25g0342 25 2089314 2094486 CCT
Lele25g0342 25 2089314 2094486 Lele27g1739 27 22646434 22651326 hybridization
Lele25g0342 25 2089314 2094486 Lele28g0358 28 2192375 2196859 hybridization