Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0338 ATGGCGGGGAAGTTCAAAACCGTTGTGGAGAATGATCTGGGCTGTGGTTTTGGGGGGAGGCTATCCCTTCTCAGAAGCTACCTGCTGAGAAAATCATCCGTCCATTCGATATCCTTGAAATCTGCCGACAATCTACAGAGCAAGGAGAGCAAAAAGGATTCCAAGAGGCCTCCAAATTATGAATCCAAGGGCGCGCGATATATCCCCACCGAATCTCACAAACCAGATTCGGATCAGAAGACGCCCAGAAAGAGCACCTTCGGTCATCAGAACAGTCAGAACCGGAGACCTTCAGATGCTGCTAGAAGCTCAACATCATCCTCTGGTAATTCAACCTACACAAGGAATGATGAGAACAAATTACCGAGGGAGCCCGTTGGAAATTCTCTGGAGCTTGCTAGGATAAGCACTAGTCACCAGCGAGACAACGAGAATAAAGCCACAGTTAACTTGAAACTTACTGGGAATTTGCTTGCAAGCAACAGGCCCAGAATTAGTGATACAAAGAAAGCGGAATCCGTTCCCAAGAGTAAAGAGTTGAATTCTGTGACTACTCCTCACAATAACGCCGGGATGGGGAACATCATGAGGAAGAATAGCAATGAACTTGTGCAACTGCGGAGACAGAGGATCCGAGGAGACCCTGAGGTGTTGAAGTCTGAGGGAAATGAAGCCTACAAACAGGGGAAATTCGAAGAAGCTTTGAAGCTGTATGACCGAGCCATTCATATTGATTCAAATAAAGCGACTTATCATTGCAATAAGAGTGCGGCTCTAATAGGCTTAGGCCGACTTCCAGAAGCAATGGTCGAATGCGAGGAATCTATTCGCCTGGAACCTTCATATACAAGAGCTCACCACCGTTTGGCAGCGATATATCTACGACTGGGAGAAGCAGAAAAGGCGATGCACTACAATAATTCAACTCCACATGCGGATTCGGTACTCTCATTCCAAGCTCAGGCTCTTCAAAATCACCTTCAGAAATGCCTTGAAGCTCGGAAAGTAAATGAGTGGAACGCTATACTAAAGGAAACACAATCTGCAATATCATTATGTGCTGATTCCGCCCCGCAGGTATATGCCTTACGAACAGAAGCCTTACTGAAGCTCCTGAAACATGAAGAGGCATCTTCTATCTACGAAAAAATGCCCAAATTTGAACTTGACTGGTGTATTAAGATTTTTGGCTTGCCACATACTGCATACTTGTTGGTAGTAGGCGCTCAAGTTCACTTGGCAGCCGGCAGGCTCGACGATGCAGTGACAACTGCTCAGCAAGCAGCTGAACTTGATCCAACCAACAAAGAGGTGAACGCAGTGGTAAGAAGGACGAGAGCAGTGAGATCAGCGAGAATGAGTGGGAATTTATTGTTCAAGGCTTCCAAGTTTATGGAAGCATGTGGGGTTTACAATGAAGGGCTAGAACATGATCCATTCAACTCAGTGCTGCTATGCAACAGAGCAGCATGCCGTTCCAAGCTGGGTCAATGCGAGAAAGCAATTGAAGATTGTAACGCAGCCCTTGCAATTCAGCCTTATTACAGCAAGGCAAGATTAAGGAGGGCAGATTGCAATGCTAAGTTGGAAAGATGGGGAGCTGCCATTCAAGACTATGAATTGCTGATGAGAGAAAAGCCAGGGGATGAGGAGGTGGCGAGGGCTTTGTTTGATGCCCAACTTCAACTCAAGAAGCTACGAGGAGAAGATATTAAAGACTTGAAATTCGGTTCCAACTTGGTTTCCATCTCAAGCAATCATCGCTTTAGACACTATGTGACCTTGCCTGGTATGTCTGTGGTTCTGTTTTGCAACAAGGCTACTACCCACAAGCAAGTATTGCTGGTATTGGAGGAAACATGCAAGAGATTTCCGTCTGTTAATTTCCTCAAGGTGGAGATTGAAGACCATCCCTACTTGGCAAAATCAGAAGGCGTGAGCTCTGTCCCAGCCTTCAGAATATACAAGAACGGATCAAGGGTCACAGAGATTCCAGGCAACAAACACGAGCTGTTAGAAAGATCTGTTAAACAGTATAGTAGCTGA 2046 0.4585 MAGKFKTVVENDLGCGFGGRLSLLRSYLLRKSSVHSISLKSADNLQSKESKKDSKRPPNYESKGARYIPTESHKPDSDQKTPRKSTFGHQNSQNRRPSDAARSSTSSSGNSTYTRNDENKLPREPVGNSLELARISTSHQRDNENKATVNLKLTGNLLASNRPRISDTKKAESVPKSKELNSVTTPHNNAGMGNIMRKNSNELVQLRRQRIRGDPEVLKSEGNEAYKQGKFEEALKLYDRAIHIDSNKATYHCNKSAALIGLGRLPEAMVECEESIRLEPSYTRAHHRLAAIYLRLGEAEKAMHYNNSTPHADSVLSFQAQALQNHLQKCLEARKVNEWNAILKETQSAISLCADSAPQVYALRTEALLKLLKHEEASSIYEKMPKFELDWCIKIFGLPHTAYLLVVGAQVHLAAGRLDDAVTTAQQAAELDPTNKEVNAVVRRTRAVRSARMSGNLLFKASKFMEACGVYNEGLEHDPFNSVLLCNRAACRSKLGQCEKAIEDCNAALAIQPYYSKARLRRADCNAKLERWGAAIQDYELLMREKPGDEEVARALFDAQLQLKKLRGEDIKDLKFGSNLVSISSNHRFRHYVTLPGMSVVLFCNKATTHKQVLLVLEETCKRFPSVNFLKVEIEDHPYLAKSEGVSSVPAFRIYKNGSRVTEIPGNKHELLERSVKQYSS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0338 681 Pfam Tetratricopeptide repeat 494 549 - -
Lele25g0338 681 Pfam Tetratricopeptide repeat 409 481 - -
Lele25g0338 681 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Lele25g0338 681 MobiDBLite consensus disorder prediction 67 83 - -
Lele25g0338 681 MobiDBLite consensus disorder prediction 177 194 - -
Lele25g0338 681 SUPERFAMILY TPR-like 453 566 IPR011990 GO:0005515
Lele25g0338 681 Gene3D Tetratricopeptide repeat domain 214 567 IPR011990 GO:0005515
Lele25g0338 681 Pfam TPR repeat 222 254 - -
Lele25g0338 681 SMART tpr_5 402 435 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 516 549 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 215 248 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 448 481 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 249 282 IPR019734 GO:0005515
Lele25g0338 681 SMART tpr_5 283 315 IPR019734 GO:0005515
Lele25g0338 681 SUPERFAMILY TPR-like 214 437 IPR011990 GO:0005515
Lele25g0338 681 Gene3D Glutaredoxin 576 680 - -
Lele25g0338 681 CDD TRX_family 589 673 - -
Lele25g0338 681 MobiDBLite consensus disorder prediction 160 194 - -
Lele25g0338 681 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 37 677 IPR044534 -
Lele25g0338 681 Pfam Thioredoxin 611 675 IPR013766 -
Lele25g0338 681 MobiDBLite consensus disorder prediction 45 60 - -
Lele25g0338 681 MobiDBLite consensus disorder prediction 42 129 - -
Lele25g0338 681 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Lele25g0338 681 MobiDBLite consensus disorder prediction 84 116 - -
Lele25g0338 681 SUPERFAMILY Thioredoxin-like 563 679 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0338 Lele-ChrLele25 2066622 2069137 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0338 25 2066622 2069137 Lele27g1744 27 22677166 22679679 hybridization
Lele25g0338 25 2066622 2069137 Lele28g0354 28 2167748 2172513 hybridization