Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0334 ATGGCAGCTACCATGGATTTCTACAGTGGCAGACCACTTCATTCAGATCCTTTCAGGGGTGAGTTGATGGAAGTGCTTGAACCTTTTATGAAAAGTCCTTCCACAACTCCCTCTCCCTCCGCAGCCTCATCCCCTTGCTCAAATTCCTCCCTACCTTCTACATCTTACTCTCATTCTTCTCCCAACTCCTGCCTATCTTCTCCACCAGTCCCTTCACAGCCTAGTTTTCTGGCAGACGGTTGCTCCACATCAATTACCCCTATATTTAGCGATGGGTTATCGAACAGCCTCAATACAATCGGTTTCGTGCAACCGAGCTGCGTTCTTGGGCTCAACAACATAACCCCATCTCAGATTTACCAGATCCAATCCCAGATCCAGCTCCAGAACCATCAAAACCAGTGCTGGCAGCAAAATAGTGCCTCTGCCACCCTTGGCTTCTTGAGTCCTAAACCTATTCCCATGAAGCATACGGGTGTGCCTCCCAAACCCACGAAGCTCTACCGAGGTGTCAGGCAGCGTCACTGGGGGAAGTGGGTTGCCGAGATCAGGCTCCCTAAGAACCGCACACGACTCTGGCTTGGCACCTTCGATACCGCCGAGGAAGCTGCACTTGCCTATGACAAGGCCGCTTACAAGCTCAGAGGTGACTTTGCCAGGCTCAACTTTCCGAACCTGCGACACCAAGGTTCTTGTGTCGGCGGCGAATTCGGGGAGTACAAGCCACTCCACTCCTCTGTGGACGCCAAGCTTCAAGCGATCTGCGAAAGCTTGGCCGATCTGCAGAAACGGGGTAAGTCAGGGAAGCCGACGGGCGCATCCAAGAGGTCAGGGGGGCGATCGAAAGCGGGTTTGAAAGATGCTCAGCCGGTGGCCAGCGAAACTGATGTTAAGGTGGAAAGCTCGTCGTCACTGGCGATGACGGAGAGCGAGGCGTCCGGGGGTTCTTCTCCCCTGTCGGATCTGACTTTCGCGGACGTGAGCGAGCCTCAGTGGGATGGGGCTTTAGATAATCTGAATCTGCAGAAGTACCCTTCTTATGAGATTGATTGGGCATCTCTGTGA 1065 0.5352 MAATMDFYSGRPLHSDPFRGELMEVLEPFMKSPSTTPSPSAASSPCSNSSLPSTSYSHSSPNSCLSSPPVPSQPSFLADGCSTSITPIFSDGLSNSLNTIGFVQPSCVLGLNNITPSQIYQIQSQIQLQNHQNQCWQQNSASATLGFLSPKPIPMKHTGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHQGSCVGGEFGEYKPLHSSVDAKLQAICESLADLQKRGKSGKPTGASKRSGGRSKAGLKDAQPVASETDVKVESSSSLAMTESEASGGSSPLSDLTFADVSEPQWDGALDNLNLQKYPSYEIDWASL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0334 354 MobiDBLite consensus disorder prediction 295 324 - -
Lele25g0334 354 MobiDBLite consensus disorder prediction 31 69 - -
Lele25g0334 354 MobiDBLite consensus disorder prediction 30 69 - -
Lele25g0334 354 MobiDBLite consensus disorder prediction 262 324 - -
Lele25g0334 354 Pfam AP2 domain 168 216 IPR001471 GO:0003700|GO:0006355
Lele25g0334 354 ProSiteProfiles AP2/ERF domain profile. 167 224 IPR001471 GO:0003700|GO:0006355
Lele25g0334 354 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Lele25g0334 354 PRINTS Ethylene responsive element binding protein signature 190 206 IPR001471 GO:0003700|GO:0006355
Lele25g0334 354 SMART rav1_2 167 230 IPR001471 GO:0003700|GO:0006355
Lele25g0334 354 Gene3D AP2/ERF domain 167 225 IPR036955 GO:0003700|GO:0006355
Lele25g0334 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 354 - -
Lele25g0334 354 SUPERFAMILY DNA-binding domain 167 225 IPR016177 GO:0003677
Lele25g0334 354 FunFam Ethylene-responsive transcription factor 2 166 225 - -
Lele25g0334 354 CDD AP2 166 226 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0334 Lele-ChrLele25 2028599 2029663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0334 1 354 AP2-EREBP Transcription Factor Family AT1G78080 52.459 1.02e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele25g0334 AP2 8.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0334 25 2028599 2029663 Lele01g0385 01 2256479 2257269 CCT
Lele25g0334 25 2028599 2029663 Lele02g0382 02 2234021 2235865 CCT
Lele25g0334 25 2028599 2029663 Lele03g0395 03 2278705 2280143 CCT
Lele25g0334 25 2028599 2029663 Lele04g0389 04 2325452 2326204 CCT
Lele02g0359 02 2081498 2084832 Lele25g0334 25 2028599 2029663 CCT
Lele25g0334 25 2028599 2029663 Lele27g1751 27 22718103 22719538 hybridization
Lele25g0334 25 2028599 2029663 Lele28g0349 28 2126257 2127285 hybridization