Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0327 ATGGGTCGCGTTAAATTGGAGATCAAGAGAATAGATAACACCATAAATCGTCAGGTTACATTCTCAAAGCGCAGAAATGGCCTCATCAAGAAAGCCTACGAGTTATCTATTCTCTGCGACATTGATATTGCTCTTATCATGTTCTCTCCCTCGGGCCGTGTCAGTCACTTTTCCGGCAGAAGAAGAATTGAAGATGTATTCACAAATTACATCAATCTACCAGACCAAGAAAGAGATGGCGCTATAACCTTTCCAGAGCAACCCTACCGCAGGAATATTCAGAACAAAGAGTATCTACTGAGGACCCTTCAACAACTGAAAAGTGAGAACGACATAGCTCTTCAGCTGGCCAATCCGGGAGACATCAACTCGGAGATTGAAGAACTGCAACAAGAAGTGAGCAGGTTACAGCAACAGCTTCAAATGGCGGAAGAACAGATACGGATATTTGAACCGGAGCCGTTAAAGATGACATCAACGGGGGAGCTTGAATCAAGCGAGAAGCATCTGATGGAAACGCTGACACGTGTAATGCAACGGAAGGAATATCTCTTGAGCAAGCACGTATCGTCGTACGACCCATCAGGTATGACGTCGCTGGAGAATGTGGGGTGGTTGGGGGAGGGCGGCGACAACCATTCCCACATATTTGACGCTTCGGTGTCTATGGACCCACTGACGTCCGGCGTGTACGAGGCATTCTCTCAGGGAGGCACCAGCTCCAACGGGGAGTGCCACGTGGCCAACGGAAGCGCCGATGCAAATCTGCAGGCCTGGCCCCAAGGCTACACTCTGTATCAGCCCATCCAGGAGGAGATGGTGGGAGCAGACATGCAGGAGATGATGCAGCCGCAGCTGAACAATCTGCCGTCCATCCCCGATCAGACTCCCCAATGA 897 0.5006 MGRVKLEIKRIDNTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRVSHFSGRRRIEDVFTNYINLPDQERDGAITFPEQPYRRNIQNKEYLLRTLQQLKSENDIALQLANPGDINSEIEELQQEVSRLQQQLQMAEEQIRIFEPEPLKMTSTGELESSEKHLMETLTRVMQRKEYLLSKHVSSYDPSGMTSLENVGWLGEGGDNHSHIFDASVSMDPLTSGVYEAFSQGGTSSNGECHVANGSADANLQAWPQGYTLYQPIQEEMVGADMQEMMQPQLNNLPSIPDQTPQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0327 298 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 208 - -
Lele25g0327 298 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Lele25g0327 298 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Lele25g0327 298 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lele25g0327 298 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele25g0327 298 Coils Coil 126 146 - -
Lele25g0327 298 FunFam MADS-box transcription factor 41 13 92 - -
Lele25g0327 298 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0327 Lele-ChrLele25 1968936 1971729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0327 1 296 Type I MADS-box Gene Family AT1G22130 55.205 4.42e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele25g0327 SRF-TF 2.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0327 25 1968936 1971729 Lele27g1760 27 22768952 22771602 hybridization