Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0319 ATGCTGGCTTCTATCTGCATACCCCGCGCTGTTGCACAGCCCAACACAACTTTTCCCAGCTGGAAATCTTTCAAGGAGAGGAAAACTGATTTGCAGACAGGAATTTCCCGCAGTGTTCACATGGAAAACCTGCAGAACGAATATCTGTTTCCTGAGATATTCATGCGGGAATCTGAACATGCCCGGAAGAATCCGTGCGCGAGAGTAATCAGACTTGGTATTGGTGATACCACAGAACCAATTCCAAACATCATAACTTCTGCTATGGTTGAGAAAGCACTTGCTTTGTCAACAGTTCAAGGTTACAGTGGATATGGACCAGAGCAAGGAAACGGGGAATTAAGGAAGGCAATAGCTGAAAGATTCTATCGGGATACACTCGTGAAGGAAAATGAGGTTTTTGTATCCGACGGCGCACAGTGCGATATCTCACGCATTCAGATGCTTCTAGCTTCTAGCTTGACGGTGGCTGTGCAGGACCCAACTTTTCCGGCGTATGTAGATTCGAGTGTAATTGTCGGCAGAGCAGGCAGGTTCCAAGCAGAAACCCAGAAGTACAGAAACATAGTGTACATGAAGTGTGTGCCGGAGAATAATTTCTTCCCAGACTTATCAGCTACGCCAAGAGCTGATGTTATTTTCTTCTGTTCTCCAAACAATCCGACCGGTAATGCAGCAACTCGGCAGCAGCTGAAGCAACTAGTGGATTTTGCAAAAGCAAACGGATCCATAATCATATATGACTCAGCATATGCTGCTTTCATATCTGATGAAAGCCCAAGATCAATATTTGAAATCCCAGGAGCCAAAGAGGTGGCAATTGAAATCTCATCATTCTCCAAATTTGCTGGTTTCACTGGGGTCCGCCTAGGCTGGACCGTTGTCCCGGAGCAATTATTGTACTCCAATGGATATCCTGTGATCAAGGATTATAATCGCCTAGTGTGCACCAGTTTCAATGGAGCTTCAAATATCGTTCAAGCTGGTGGACTCGCCTGCCTTTCTGATGAAGGCTTTCATTCACTGGGTAGAGCTGTGAATTATTACAAGGAGAATGCGAAGATTCTGGTAGACACGTTTGAATCGCTTGGGCTGAAGGTGTATGGAGGCAAAAACGCACCTTACGTATGGGTGCATTTTCCAGGGAGAAAATCGTGGGACGTGTTCAACAAGATTCTGCAGCGAGCGGACATAGTTACCGTCCCAGGGATAGGATTTGGACCTGGCGGCGAGGGGTTTATTAGAGTTAGTGCATTTGGTCAGAGGGACAGCATATTGGAAGCTTCAATGAGGCTGCGAAAATTTCTGTAG 1311 0.4607 MLASICIPRAVAQPNTTFPSWKSFKERKTDLQTGISRSVHMENLQNEYLFPEIFMRESEHARKNPCARVIRLGIGDTTEPIPNIITSAMVEKALALSTVQGYSGYGPEQGNGELRKAIAERFYRDTLVKENEVFVSDGAQCDISRIQMLLASSLTVAVQDPTFPAYVDSSVIVGRAGRFQAETQKYRNIVYMKCVPENNFFPDLSATPRADVIFFCSPNNPTGNAATRQQLKQLVDFAKANGSIIIYDSAYAAFISDESPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPEQLLYSNGYPVIKDYNRLVCTSFNGASNIVQAGGLACLSDEGFHSLGRAVNYYKENAKILVDTFESLGLKVYGGKNAPYVWVHFPGRKSWDVFNKILQRADIVTVPGIGFGPGGEGFIRVSAFGQRDSILEASMRLRKFL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0319 436 Pfam Aminotransferase class I and II 69 418 IPR004839 GO:0009058|GO:0030170
Lele25g0319 436 SUPERFAMILY PLP-dependent transferases 47 432 IPR015424 -
Lele25g0319 436 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 37 434 IPR019942 GO:0008483
Lele25g0319 436 FunFam LL-diaminopimelate aminotransferase, chloroplastic 79 336 - -
Lele25g0319 436 Gene3D - 79 336 IPR015421 GO:0003824
Lele25g0319 436 Hamap LL-diaminopimelate aminotransferase [dapL]. 36 435 IPR019942 GO:0008483
Lele25g0319 436 Gene3D Aspartate Aminotransferase, domain 1 49 432 IPR015422 GO:0003824
Lele25g0319 436 CDD AAT_like 70 434 - -
Lele25g0319 436 PANTHER AMINOTRANSFERASE 23 435 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0319 Lele-ChrLele25 1926844 1929825 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0319 25 1926844 1929825 Lele02g0359 02 2081498 2084832 CCT
Lele25g0319 25 1926844 1929825 Lele27g1767 27 22810456 22813456 hybridization
Lele25g0319 25 1926844 1929825 Lele28g0333 28 2011177 2014160 hybridization