Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0311 ATGCATCACCTACCTCGTTTATTCGGTCACAGAAAGCAAAAAAAGGGCATGGACCCGAATAAAGTCCGAAGAAAACCCCGGCTCGATCGCAGCAATGCTGTCAAGAACGCTGATTATGATGCTGGGTCGTCTTCGTCGTCTCTTGACAACTCGTGTGGATCCCTCTACACTCGATCAACAGAGTTCTGTGATCGAACCAGCTTCCGAATTGCGGGAGCTGAGGGTGAGGTTGATCGCGTATGCAGAGATTTGGGGCTTTCAGGACCTGAAGACTTCTCCATCCCCGAAGCGGCGTGGGAGGCTATGAAAATTAGATCGTCTTCGGATATTACGCCAAGTTCGAAGATGAACGAGTTAGAAGGTCAAGAGAATGAGGAATTACAAGACGAGAGTCCAGTAGTGGACGACTTAGGTAACAGAGTCGAAGAAAGGATTACAGTTAGATGTCTGGCTGAGCCAACACAAGCTGAGCCTGCTGAGACTAGTGGGTGCTGCATTACTGGTGGTGTTGTTTCCGGAACCAGTGTCGGAGTAGGTATTAAAGGAATCCGTCCACCGATGCTAAGGCCCCCGCCTGGGGCGAGGCATCCAGTTATTGATAACACTTGCTCTACTTGGGACATTTTAAGGGATTTAGCTCCGCAAGTTGAAAGGCAATCTTCAGGAAATTACGGGGAGTTTAACTCTTCCGATGATAACGAAGTAATACGCAGGGAAGCAGAGCAAGGAGAAGTAAAGAAAGAGGAAAAAGAAGAACCGGTAGTTGAAGGCAAGGTAAGTCCGAGAGGAGAAGAGGACGTTAATGCAACAAGGATTGCGGAGATCGTCTCTCAGTTTTCGGCATCGTGTTCGTTTACTACGTCAAATGAAGATGATTCTTCTAGCACTTTCACGGATCCTCCATCGAATAATATATCTCCCAACGGAAGATTCAGGCGCAGAATTACGAACTGGGAAAAGGGTGAGCTTTTGGGACGTGGTTCGTTTGGGTCAGTCTATGAAGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAGGAAGTTTCACTACTTGATCAAGATGACCAGGGAAGGCAAAGTATATATTGCCTGGAGCAGGAAATTGCTCTTTTGAGTCAGTTTGAACATGAGAATATAGTTCAATACTATGGCACAGAAATGGATCAATCAAAGCTGTACATTTTTCTTGAGCTTGTGACTAAAGGTTCCCTCGCAAATCTTTATCGGCGGTACAATCTTCGAGACTCCCAAGTATCTGCCTACACAAGACAGATTCTGCACGGTTTAAAGTACCTTCATGATCGAAATGTGATTCACAGGGATATTAAATGTGCAAATATATTGGTAGACGCATATGGATCTGTCAAACTTTCAGATTTTGGATTGGCAAAGGCAACCAAACTGAATGATATTAAGTCGTGCAAGGGGACACCATTCTGGATGGCACCTGAGGTTGTGAAACGAAAGAATCAAGGTTATGGACTTCCGGCTGATATATGGAGTCTGGGGTGCACTGTGCTTGAGATGTTAACAGGCCAAATTCCATACTCTCATTTGGAATGTATGCAGGCTTTGTTTAGAATCGGAAAGGGTGAGCGCCCTCTCGTTCCTGACTCTCTTTCAAGAGATGCGCAAGATTTTATCCTGCAGTGTCTTCAAGTCAATCCTGATGATCGTCCTACTGCTGCTCAGCTTTTAAACCATCAATTTGTCCAAAGGCCTCTTTCCACATACTCTGGCTCTGCATCTCCTTATATACCTCTCTGTTCATCATTGGATGGGGAGAATTATTTGGCGTCCAATCTTCAAGTTGCTGGAGTTGGTCACGGAGCCACTATCGCTGCAAATCTGCAAGTGCTGCTCGTGCTCTGCACTTTCGATTTTTTTCTTCTTGAAACCTAGTCGCAGGTCGCAGGAGCAGGGGGGGGGATACTCTTTATTTCCTCCCATTTGAAGAACGCGAGCGCCAGGATCGGGGCCCTCTCCCCTTCTCATTCTCCTTCTAACCGCATATAG 2016 0.4593 MHHLPRLFGHRKQKKGMDPNKVRRKPRLDRSNAVKNADYDAGSSSSSLDNSCGSLYTRSTEFCDRTSFRIAGAEGEVDRVCRDLGLSGPEDFSIPEAAWEAMKIRSSSDITPSSKMNELEGQENEELQDESPVVDDLGNRVEERITVRCLAEPTQAEPAETSGCCITGGVVSGTSVGVGIKGIRPPMLRPPPGARHPVIDNTCSTWDILRDLAPQVERQSSGNYGEFNSSDDNEVIRREAEQGEVKKEEKEEPVVEGKVSPRGEEDVNATRIAEIVSQFSASCSFTTSNEDDSSSTFTDPPSNNISPNGRFRRRITNWEKGELLGRGSFGSVYEGISEDGFFFAVKEVSLLDQDDQGRQSIYCLEQEIALLSQFEHENIVQYYGTEMDQSKLYIFLELVTKGSLANLYRRYNLRDSQVSAYTRQILHGLKYLHDRNVIHRDIKCANILVDAYGSVKLSDFGLAKATKLNDIKSCKGTPFWMAPEVVKRKNQGYGLPADIWSLGCTVLEMLTGQIPYSHLECMQALFRIGKGERPLVPDSLSRDAQDFILQCLQVNPDDRPTAAQLLNHQFVQRPLSTYSGSASPYIPLCSSLDGENYLASNLQVAGVGHGATIAANLQVLLVLCTFDFFLLETXSQVAGAGGGILFISSHLKNASARIGALSPSHSPSNRI 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0311 671 ProSiteProfiles Protein kinase domain profile. 318 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0311 671 MobiDBLite consensus disorder prediction 287 310 - -
Lele25g0311 671 MobiDBLite consensus disorder prediction 219 253 - -
Lele25g0311 671 MobiDBLite consensus disorder prediction 231 253 - -
Lele25g0311 671 MobiDBLite consensus disorder prediction 1 21 - -
Lele25g0311 671 Gene3D Transferase(Phosphotransferase) domain 1 315 584 - -
Lele25g0311 671 Pfam Protein kinase domain 319 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0311 671 FunFam Mitogen-activated protein kinase 1, putative, expressed 316 583 - -
Lele25g0311 671 MobiDBLite consensus disorder prediction 1 44 - -
Lele25g0311 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Lele25g0311 671 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 79 584 - -
Lele25g0311 671 SUPERFAMILY Protein kinase-like (PK-like) 293 584 IPR011009 -
Lele25g0311 671 MobiDBLite consensus disorder prediction 109 128 - -
Lele25g0311 671 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Lele25g0311 671 SMART serkin_6 318 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0311 Lele-ChrLele25 1867188 1877110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0311 9 575 MAP Kinase Kinase Kinase AT4G08500 50.492 5.84e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele25g0311 Pkinase 5.9e-69 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0311 25 1867188 1877110 Lele28g0320 28 1930775 1939915 hybridization