Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0299 ATGGCAGGCGCCATTATGGGCATTTCTTGTTTGGCTCAGGCGACTTTCTTCTTTATTACAATGAGCAAACCCAGAATCCATAGGAAACCCACCAAGCAAGCCATTGCCGACCAGAACCAAAAGCCGCAGAAATCAGAGAAACAACCCTCTTGGGCAGTTGTAAGAGGTCTATTGACTTGTAGAAATGTTCAAACCCAGCCGCAGCAAGTTCCTGAAGGGAAACAGCAACCAAAGAAGAAACAAGAACAGCGAAAGTTGCAGGAAGAAAGAGTCCCAGAAGATCAGAACGGCAAGAAATGCAAGAAGATGAAATGTTCAGGCTCGCTTTGTAATAACTCCAATATTATGGCAAAGCCTGAAACGGGATTCCCGGATGCGCACAGCAAAAAGGCCTCACTGTCTGCATGTAGCAGCAGCAACAATGATTCTTCAAGCAGATCCATGAGAGCTCCTCCACGAGAACCCAACGCTGCCGTTTTAGCATCTTCTTCTTCACTGTCAACATCTTCTAGTTCTTCTGTTAGTGGGTCTTTCAAGGGAATGCCCTTCAGGAGACTCTCTGGTTGTTATGAGTGCCGAATGGTGGTTGAACCTGTTCTGGGTTTCACCAGAGACCCTTCTCTTCGGAGTAGCATTTGTTCATGCCCGGACTGTGGTGAGATCTTCACCAAAGCAGAAAGCTTGGAGCTTCACCAGGCTGTTAAACATGCAGTATCGGAACTGGGTCCCGAAGATACGAGCAAGAATATAGTTGAAATCATATTCCATTCAAGCTGGCTGAAGAAACAGTCCCCAGTCTGCAAAATAGATCGCGTCCTCAAGGTCCACAACACGCAGCAGACGATTTCCAGATTCGAAGAATATAGAGATTCCATAAAAGCCAAAGCCACAAAACTCCCCAAGAAACACCCACGTTGCATAGCAGACGGCAACGAGCTGCTCAGGTTTCACGCCACCACCTTCGTTTGCTCTCTGGGCCTAAACAGCTCGTCCAACCTCTGCAACTCAATACCTCAGTGCAACGTTTGCAACATAATCAAGAACGGGTTTAAGGTGGCAGCAGAAACGAACGGAGGAAACGACGGGAAGGGGATATTGACGACGGCGACTAGCGGGAAGGCCCACGACAAAGCGGTGGTTTCAGCGGACGATAAGAACAACACTAGGGCGATGCTGGTTTGTCGGGTAATAGCTGGCAGGGTGAAGAAGAACATGGAAGGAAGTATGGAGGAATATGATTCGATGGGAGGGGGTGTCGGGGCGTATTCTAATTTGGACGAGTTGTATGTGTTGAATCCAAGAGCTATATTGCCTTGTTTTGTTGTGATCTACAGAGGATTTTGA 1344 0.4769 MAGAIMGISCLAQATFFFITMSKPRIHRKPTKQAIADQNQKPQKSEKQPSWAVVRGLLTCRNVQTQPQQVPEGKQQPKKKQEQRKLQEERVPEDQNGKKCKKMKCSGSLCNNSNIMAKPETGFPDAHSKKASLSACSSSNNDSSSRSMRAPPREPNAAVLASSSSLSTSSSSSVSGSFKGMPFRRLSGCYECRMVVEPVLGFTRDPSLRSSICSCPDCGEIFTKAESLELHQAVKHAVSELGPEDTSKNIVEIIFHSSWLKKQSPVCKIDRVLKVHNTQQTISRFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHATTFVCSLGLNSSSNLCNSIPQCNVCNIIKNGFKVAAETNGGNDGKGILTTATSGKAHDKAVVSADDKNNTRAMLVCRVIAGRVKKNMEGSMEEYDSMGGGVGAYSNLDELYVLNPRAILPCFVVIYRGF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0299 447 ProSitePatterns Zinc finger C2H2 type domain signature. 213 236 IPR013087 -
Lele25g0299 447 MobiDBLite consensus disorder prediction 121 177 - -
Lele25g0299 447 FunFam C2H2-like zinc finger protein 237 445 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 29 50 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 64 102 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 33 47 - -
Lele25g0299 447 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 102 444 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 131 150 - -
Lele25g0299 447 Gene3D - 237 445 - -
Lele25g0299 447 SUPERFAMILY ADP-ribosylation 238 446 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 75 101 - -
Lele25g0299 447 MobiDBLite consensus disorder prediction 158 177 - -
Lele25g0299 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 241 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0299 Lele-ChrLele25 1785893 1788887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0299 178 445 C2H2 Transcription Factor Family AT1G75710 53.242 2.12e-99 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele25g0299 None None None