Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0295 ATGTCTCAAACTCCCAGATCCACCGGCACCGTCAAGTGGTTCAATACCTACAAGGGTTTCGGATTCATCGCCCCCGATGACGGTGGCGATGATCTCTTTGTCCATCACACTTCCATCCGATCATCCGGTTATCGCACCCTGTCCGAGGGCCAGCCCGTCGAGTTCCTTCTCGATTATGCCCAAGATGGGCGAAGCAAAGCTGTTGACGTCACCTCTCCCCTGAGATCTCGTCCTTCTGATGCCACTGGAAGAGGATATTATGGCGGCAGAGGCCGACGGGGTGGATATGGCGGACGCCATGTTGGCGGGAATACTCGAGGTGATCCTTACCGGTATGGGCGGGGTGGCGGCATTGGGCGGAGAGGTGGTGGCTACGTTGGTGGGGGTAGATACAGCGAGGGCGTCGAGTGTTACAACTGTGGCCGCGTGGGTCATTTGGCAAGAGACTGTTATCAGGGTGTTGGTGGTGGCACTCGCAGACGCGGTGGCGGTAGTAGTGGCGGCGGAGGAGGAGGCGGGGCGTGCTTTCATTGTGGGGAGGAAGGGCATTTTGCGAGGGAATGCCCCAACATCGATAAATGA 582 0.5808 MSQTPRSTGTVKWFNTYKGFGFIAPDDGGDDLFVHHTSIRSSGYRTLSEGQPVEFLLDYAQDGRSKAVDVTSPLRSRPSDATGRGYYGGRGRRGGYGGRHVGGNTRGDPYRYGRGGGIGRRGGGYVGGGRYSEGVECYNCGRVGHLARDCYQGVGGGTRRRGGGSSGGGGGGGACFHCGEEGHFARECPNIDK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0295 193 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Lele25g0295 193 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Lele25g0295 193 SUPERFAMILY Retrovirus zinc finger-like domains 129 190 IPR036875 GO:0003676|GO:0008270
Lele25g0295 193 SMART csp_8 8 73 IPR011129 GO:0003676
Lele25g0295 193 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Lele25g0295 193 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Lele25g0295 193 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Lele25g0295 193 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 190 - -
Lele25g0295 193 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Lele25g0295 193 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Lele25g0295 193 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Lele25g0295 193 ProSiteProfiles Zinc finger CCHC-type profile. 175 190 IPR001878 GO:0003676|GO:0008270
Lele25g0295 193 MobiDBLite consensus disorder prediction 68 108 - -
Lele25g0295 193 Gene3D - 1 71 IPR012340 -
Lele25g0295 193 SMART c2hcfinal6 174 190 IPR001878 GO:0003676|GO:0008270
Lele25g0295 193 SMART c2hcfinal6 136 152 IPR001878 GO:0003676|GO:0008270
Lele25g0295 193 Pfam Zinc knuckle 174 190 IPR001878 GO:0003676|GO:0008270
Lele25g0295 193 Pfam Zinc knuckle 136 150 IPR001878 GO:0003676|GO:0008270
Lele25g0295 193 Gene3D - 170 193 - -
Lele25g0295 193 Gene3D - 128 166 - -
Lele25g0295 193 ProSiteProfiles Zinc finger CCHC-type profile. 137 150 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0295 Lele-ChrLele25 1774971 1775552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele25g0295 CSD 1.2e-22 CL0021