Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0284 ATGGCGCGCGTTACCCAACTTCCCTGCGATTGTGACGGCGTTTGTATGGCTTGCAATGCGAAGCCGGCAGAGGCCGAGAAGCTGACGTGTAAAACTTGCGCCTCCCAGTGGCATGTTGACTGTCTTTCTTCCCGTCCGGGAACGATGGCGGAGACCGTTCAATGGGAATGCTCCGACTGTTCGACCACCCTACCCTCCGACCTTCAGCTGAGCCATGCGAAGATCTCGCACAAGGGAGCTGGGGATTTGATAGCTGCGATTCGAGCAGTTGAAGCAGATGGTTCTCTTACTGAGATGGAGAGGGCCAGGAAGCGCCAACGCCTCCTGTGCGGAAAGGCCGTGTTGGAGGAGGACGACGACAAAGAGGAGAAGAGGGGAAAAGGAGAAGAGAAGGGCGTTTTAGACATTCTCAACGGAACTCTGGGCTGTTCCTTCTGTCTGCAACTATTAGATAGGCCAGTCACGGGTAGCTGGCCAGACTCCGTGGGGGCACAATTTCTGCCTCAAATGCTTCTAGCAATGGAACCGGCAAGGCAACAGTGTCGTACGATGATCCCTCACGACGTGGCAAGCGAGCTTCGGATTAATTCTGCCCTTGTAAATGCCATTCGTATGGCAAAAGCTTCGAAAGTGAATGTTGCCGGAGAAACTTCAAGATTGTACCAATTTGTTCACAACCAAGATAGACCCGACACAGCATACACGACAGAGCGGGCCCAGAGGAACGGCAACGCAAATGCTGCAAGCGGGAAAATATTTGTAACAATACCTCAGGATCATTTTGGAGGTTATGTTGATGATGAGGATCATGGAGAGTGGTTTCTTTACACAGGAAGCAGTGGTAGAGATCTAAGCGGCAACAAACGCACTAATAAAGAGCAATCTTTTGATCAAACGTTTGACAAGTTTAACTTGGCGCTTAAAATCTCACAAGGAAAAAGGGTCCTCGTACGCCCCTCAACAAGGCATAAGATACGCGGCATTTACAGAATAGAAAAGTGCTGGCAGAAACAAGGAATGCCGCTATGCACTCAATCAAGGCTATTGCTCCTACCATTCGCGCTTTCCCTTTTCTTCCTTGCGAGTCGCCTTCTACCTCGAGCAGAGGCCATATGGTTAAACATTCCTAGCTCCGGAACCAAGTGCGTATCTGAGGAAATCCAATCTAACGTCGTCGTGTTGGCCGATTACGTTGTGGTGGCCGATCATGCTGACGCTCAGCACCTTCCTACTATTTCGGTCAAGGTAACTTCTCCTTATGGAAACAACCTTCACCACAATGACAACGTTACCCATGGTCAATTTGCATTTACAACTACGGAGAGTGGGAACTACTTGGCTTGTTTCTGGGTGGATGGTCAACATCAAGAAACAAGTCTCAACCTTGAATGGAAAACTGGAATTTCCGCCAAGAGTTGGGAAACAGTTGCGAGGAAAGAAAAAATTGAGGCAAGTTTCTCCAATGAGTTATTTCCTCCAACCTCCATAATGAAACTTGAAGGGGCAGTGGAAGCCATCCATGAGAATCTGATTTATTTGAAGAATAGGCCTTTCTTCTTATTTCCTTGGCTTTATTGGGTAGAAATTTGTGGTATGGGATTGGAAAACATATATAAAGATGTTCATGGGATAAAACCAAGTACAAATGTTAGGAATGGTGATAAGAAAAAGGATCCATCTCCATTTCCCCCCCTTTTCTTGCAATGTCTAGAGGAAGCAGAGATGAGGGAAGTCAGTGAAAAAACTAATGCTAAAGTGGCTTGGTTAAGCATAATGTCTCTTGGAGTTTGCATTTCGGTTTCAGTTTTTCAGGTTTGGTACCTGAAGCGCTACTTTCAGAAGAAGAAGCTCATATAG 1857 0.4701 MARVTQLPCDCDGVCMACNAKPAEAEKLTCKTCASQWHVDCLSSRPGTMAETVQWECSDCSTTLPSDLQLSHAKISHKGAGDLIAAIRAVEADGSLTEMERARKRQRLLCGKAVLEEDDDKEEKRGKGEEKGVLDILNGTLGCSFCLQLLDRPVTGSWPDSVGAQFLPQMLLAMEPARQQCRTMIPHDVASELRINSALVNAIRMAKASKVNVAGETSRLYQFVHNQDRPDTAYTTERAQRNGNANAASGKIFVTIPQDHFGGYVDDEDHGEWFLYTGSSGRDLSGNKRTNKEQSFDQTFDKFNLALKISQGKRVLVRPSTRHKIRGIYRIEKCWQKQGMPLCTQSRLLLLPFALSLFFLASRLLPRAEAIWLNIPSSGTKCVSEEIQSNVVVLADYVVVADHADAQHLPTISVKVTSPYGNNLHHNDNVTHGQFAFTTTESGNYLACFWVDGQHQETSLNLEWKTGISAKSWETVARKEKIEASFSNELFPPTSIMKLEGAVEAIHENLIYLKNRPFFLFPWLYWVEICGMGLENIYKDVHGIKPSTNVRNGDKKKDPSPFPPLFLQCLEEAEMREVSEKTNAKVAWLSIMSLGVCISVSVFQVWYLKRYFQKKKLI 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0284 618 ProSiteProfiles GOLD domain profile. 380 490 IPR009038 -
Lele25g0284 618 Pfam emp24/gp25L/p24 family/GOLD 571 613 IPR009038 -
Lele25g0284 618 Pfam emp24/gp25L/p24 family/GOLD 372 516 IPR009038 -
Lele25g0284 618 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Lele25g0284 618 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 3 262 IPR045134 -
Lele25g0284 618 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Lele25g0284 618 ProSiteProfiles YDG domain profile. 211 357 IPR003105 -
Lele25g0284 618 SUPERFAMILY PUA domain-like 262 343 IPR015947 -
Lele25g0284 618 SMART EMP24_GP25L_2 370 613 IPR009038 -
Lele25g0284 618 Gene3D - 252 350 IPR036987 -
Lele25g0284 618 SMART G9a_1 206 345 IPR003105 -
Lele25g0284 618 SUPERFAMILY FYVE/PHD zinc finger 7 64 IPR011011 -
Lele25g0284 618 Pfam SAD/SRA domain 262 339 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0284 Lele-ChrLele25 1701222 1709191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0284 1 340 C2H2 Transcription Factor Family AT5G39550 39.905 2.61e-79 261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0284 25 1701222 1709191 Lele27g1804 27 23036818 23039336 hybridization
Lele25g0284 25 1701222 1709191 Lele28g0300 28 1774813 1775862 hybridization