Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0275 ATGACGCATCTCACCACCGATTCCCCCCTTTCTCGTAGCATAGTCCGTGCTTTCTTGGATTTCCTCAACTTAGTTGAACCGGCCCCTGGCGTTGATGTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGTGTTTAAGCTTAACACATCTCCGACAGATGTTCATGCAAAATCTGTTTCTTTGGTCGACATATTCAAGTCTCTTGAGTCGAGCAAGCAATGTGAAGCTAGTCAGTCAGATGTTGGTAAACAACCAGATGACATGGATGCATCGGCTTCATTCACTGCTCACAATGCTGATCATACACACAAACATTCCGAGGATGAAGATTGGACTCAAGAGTCTCGCACATTTGGAGTTTCCAAAGACGAGCTGTGTGGGCAATTCTTTAATGCTCTGGAGAAAGTCCACTTCTTTAGGACAAATCCTGATGGAACTGATGACCCAGTGCAACTGGAGAAAGCGTCTCGTATATTTAATGATGCTGTAATGGAGATGGAAAGATCTGAGTGTCAGGAGTTTAGTCTGACGAATTTGGCTGAATTGCTGAAATCACAAGGCAATAAGGCAATGCAATCCAAGAAATACCCTGATGCAATTGATTTCTATAATTGTGCAATTGCACTTTGCGAAGGGAATGCTGTTTACTACTGCAACCGGGCCGCTGCTTACACTCAGATCCACAAATATATAGAAGCAATCCAAGACTGTCTTAAATCTATTGAGATTGACCCGAACTATAGCAAGGCATACAGTCGACTGGGTTTAGCATATTATGCTCAGGGAAATTACAGAGATGCCATCGATAAAGGGTTTAGGAAAGCCTTGCTATTGGATCCAAGTAATGAATCAATTAAAGAAAATATACGGGTTGCTGAGCAAAAATTAATAGAGGAGCAACATAGTGCAGATCACAGTCAGAATTCAAGATCATCTCAGGAGTCTCAGAACCAGTCTGCACGAGGGTCAAGTGGAAATGCAGCTCCACAGCCATTCAACTCAATGCCATTTAATGCCAACGATCTTGCAAGCATGTTTATGAACATAGCCGCAAACACTGCCAATGCGTATCAAGGACAGCATCCCCAGGAACGGCAAGGAGAAGATAGCAATACCAATTCATCTAACGAACCTGAAATAAGGATAGGGAGCAATATTAATTTGAACATGAACCAAATGCCTGAGGATTTGACGGGGGCTTTCAGGTCTGTGATGGAAATGTTATCTGGAGCAGCGCCTCCAGGCGGCGGGCAACCACAAGATCACTTCAATGGAAGAACTGCGCCAAACTAG 1299 0.4396 MTHLTTDSPLSRSIVRAFLDFLNLVEPAPGVDVEGLEVARECLTEVFKLNTSPTDVHAKSVSLVDIFKSLESSKQCEASQSDVGKQPDDMDASASFTAHNADHTHKHSEDEDWTQESRTFGVSKDELCGQFFNALEKVHFFRTNPDGTDDPVQLEKASRIFNDAVMEMERSECQEFSLTNLAELLKSQGNKAMQSKKYPDAIDFYNCAIALCEGNAVYYCNRAAAYTQIHKYIEAIQDCLKSIEIDPNYSKAYSRLGLAYYAQGNYRDAIDKGFRKALLLDPSNESIKENIRVAEQKLIEEQHSADHSQNSRSSQESQNQSARGSSGNAAPQPFNSMPFNANDLASMFMNIAANTANAYQGQHPQERQGEDSNTNSSNEPEIRIGSNINLNMNQMPEDLTGAFRSVMEMLSGAAPPGGGQPQDHFNGRTAPN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0275 432 MobiDBLite consensus disorder prediction 308 338 - -
Lele25g0275 432 MobiDBLite consensus disorder prediction 302 338 - -
Lele25g0275 432 SUPERFAMILY TPR-like 181 295 IPR011990 GO:0005515
Lele25g0275 432 Gene3D Immunoglobulin FC, subunit C 5 74 - -
Lele25g0275 432 Pfam Tetratricopeptide repeat 216 249 IPR001440 GO:0005515
Lele25g0275 432 Gene3D Tetratricopeptide repeat domain 178 331 IPR011990 GO:0005515
Lele25g0275 432 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Lele25g0275 432 MobiDBLite consensus disorder prediction 359 387 - -
Lele25g0275 432 SMART tpr_5 182 215 IPR019734 GO:0005515
Lele25g0275 432 SMART tpr_5 216 249 IPR019734 GO:0005515
Lele25g0275 432 SMART tpr_5 250 284 IPR019734 GO:0005515
Lele25g0275 432 Coils Coil 284 304 - -
Lele25g0275 432 MobiDBLite consensus disorder prediction 410 432 - -
Lele25g0275 432 PANTHER LD24721P 2 413 - -
Lele25g0275 432 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 177 328 - -
Lele25g0275 432 ProSiteProfiles TPR repeat profile. 250 284 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0275 Lele-ChrLele25 1620403 1626587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0275 181 278 U-box Gene Family AT3G07370 32.653 7.02e-09 54.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0275 25 1620403 1626587 Lele27g1814 27 23106544 23112785 hybridization
Lele25g0275 25 1620403 1626587 Lele28g0293 28 1721767 1734238 hybridization