Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0228 ATGGGTTACAACATCAGCATAAACAGCTATCGCAACCACTCTCGAGTGTTGGAGTTTAATCCTTGCAGCTATGCGTTTGTGGTCGAAGACGGTGCTTTCAATTTATCTTCTCTAGATCTCGTAGATCTGCGAGGCAAAAGAGATTTTCCTATGATCGTTGATTGGGCCATTTGGGATGGGAATTGCTCCGAAGCAATCAAGAACAGAAGCAGCTATGCTTGCATGGACAACAGCTTCTGCGTGGATTCACAAAATGCTCCCGGCTACCTCTGCAGATGCAATAGAGGGTTTCGAGGGAATCCTTACCTGTCTGGTTCTTATGGTTGCCAAGAGTGTTATGCCTACAAACTTGCAGACATCGACGAGTGCAGCAACAGCACATTAAATCTCTGCAGTCAAACGTGCAACAATCTGTACGGCACCTACAATTGTTCTTGCCTCCCGGGATACGAAGGCAACGGTTTCAAGAACGGAACGGGATGTGTTTTAGTGGATAAATCCAATAATGTCCCAATCACTGAAGTTGCTTTAGGCATCAGCGTATCCCTCTTGGCTCTTGGAATTGTCATATCCTCCTTATGTTGGGTGGGAAGGAAAAGAAAGCTCGTAAACATCAGAAATAAGTTCTTCGAGAAAAACGGGGGTCTCATGCTTCAGGAACTACTTTCCGAGCGACATGGTTACAATGAAATGGCAAAGCTATTTACCGAAGAGGAGCTCAAAGAAGCCACAAATAACTTCCATGAAAGCAAAATTCTTGGGCGTGGAGGCCAAGGAACAGTTTACAAAGGAACATTACCAGATAAAAGAGTGGTTGCCATTAAGAAGTCCAGAATAGCAGAGCAAAGCCAAGTCAGGGATTTCATCAATGAAGTGCTTGTGCTCTCACAAATCAACCACAGGAATGTGGTCAAACTTCTTGGTTGTTGTTTGGAAACTGAAGTTCCTCTTCTAAAAGACCGTTTGCTTGACATTCTAGATAGTAGAGTGTTGGATGAGAAAAATGTAGGGCAACTTAAGGAAGTTGCTGTATTGGCGAGTAGATGTATAAGAGTGAAGGGGGAAGAGAGGCCAACCATGAAGGAAGTATCAATTGAGCTAGAAGGTCTGATGGCTATAGAAAAGCATCCGTGGGATGGAAAATATTTAAATTCCGAGGAAGCTGAATACTTGCTTGCTCCAATATATGGAACTGAAGGCAGTACTAGCAACTCCGTGGGGTTTGAAAGCATAGGGAAGCAACTTGCACTTGAGATGAGAAGTGGACGCTGA 1272 0.4403 MGYNISINSYRNHSRVLEFNPCSYAFVVEDGAFNLSSLDLVDLRGKRDFPMIVDWAIWDGNCSEAIKNRSSYACMDNSFCVDSQNAPGYLCRCNRGFRGNPYLSGSYGCQECYAYKLADIDECSNSTLNLCSQTCNNLYGTYNCSCLPGYEGNGFKNGTGCVLVDKSNNVPITEVALGISVSLLALGIVISSLCWVGRKRKLVNIRNKFFEKNGGLMLQELLSERHGYNEMAKLFTEEELKEATNNFHESKILGRGGQGTVYKGTLPDKRVVAIKKSRIAEQSQVRDFINEVLVLSQINHRNVVKLLGCCLETEVPLLKDRLLDILDSRVLDEKNVGQLKEVAVLASRCIRVKGEERPTMKEVSIELEGLMAIEKHPWDGKYLNSEEAEYLLAPIYGTEGSTSNSVGFESIGKQLALEMRSGR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0228 423 SMART egf_5 122 162 IPR000742 -
Lele25g0228 423 SMART egf_5 61 110 IPR000742 -
Lele25g0228 423 FunFam Fibrillin 2 114 158 - -
Lele25g0228 423 Gene3D Phosphorylase Kinase; domain 1 220 318 - -
Lele25g0228 423 SMART tyrkin_6 247 415 IPR020635 GO:0004713|GO:0006468
Lele25g0228 423 ProSiteProfiles Protein kinase domain profile. 247 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0228 423 ProSitePatterns Calcium-binding EGF-like domain signature. 119 144 IPR018097 GO:0005509
Lele25g0228 423 Gene3D Laminin 119 165 - -
Lele25g0228 423 ProSiteProfiles EGF-like domain profile. 119 156 IPR000742 -
Lele25g0228 423 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 320 371 IPR045274 GO:0007166
Lele25g0228 423 CDD EGF_CA 119 152 - -
Lele25g0228 423 FunFam Wall-associated receptor kinase 2 217 321 - -
Lele25g0228 423 SUPERFAMILY EGF/Laminin 119 154 - -
Lele25g0228 423 SUPERFAMILY Protein kinase-like (PK-like) 230 317 IPR011009 -
Lele25g0228 423 Pfam Protein tyrosine and serine/threonine kinase 250 314 IPR001245 GO:0004672|GO:0006468
Lele25g0228 423 Pfam Calcium-binding EGF domain 119 154 IPR001881 GO:0005509
Lele25g0228 423 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 135 146 IPR000152 -
Lele25g0228 423 SMART egfca_6 59 110 IPR001881 GO:0005509
Lele25g0228 423 SMART egfca_6 119 162 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0228 Lele-ChrLele25 1340622 1342675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0228 319 423 Receptor kinase-like Gene Family AT1G21230 42.056 1.05e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Lele25g0228 PK_Tyr_Ser-Thr 4e-10 CL0016