Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0180 ATGGATTGGAGCACTTATAGTTCCAAGAATTCCTTCTGTATGAATTCCTGGAGCTCGCGAGCTGCTTCGACTCTCTGGGCCAACCCTTGCCCAGCGCGATCAGTGTTGGTTGAAACGGGAGAAAATGGTGAATGCTCTAGATCTTGGGTAGACGACATTTACTGGACCCGTTTCCAATTCGTCCATTTTGCCCACTTTCTTCCTAAGTGCTTTGATCGACAGCTTGCACTGCCTAAGAGTTTTTCAGATAATTTGAGGAAGAAAGTGCCAGATAATGTGATTCTGAAAGGTCCTGGCGGTGATGAGTGGAGTGTTGGATTGACAACCAGAAATGATACCTTGCACTTCACGCATGGCTGGCAACAATTTGTTAAAGATCACTGGGAGCTCCTGTGA 396 0.4646 MDWSTYSSKNSFCMNSWSSRAASTLWANPCPARSVLVETGENGECSRSWVDDIYWTRFQFVHFAHFLPKCFDRQLALPKSFSDNLRKKVPDNVILKGPGGDEWSVGLTTRNDTLHFTHGWQQFVKDHWELL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0180 131 CDD B3_DNA 71 127 IPR003340 GO:0003677
Lele25g0180 131 Pfam B3 DNA binding domain 73 127 IPR003340 GO:0003677
Lele25g0180 131 Gene3D - 56 128 IPR015300 -
Lele25g0180 131 SUPERFAMILY DNA-binding pseudobarrel domain 60 127 IPR015300 -
Lele25g0180 131 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 69 127 IPR044837 -
Lele25g0180 131 ProSiteProfiles B3 DNA-binding domain profile. 60 131 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0180 Lele-ChrLele25 1089483 1092201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0180 41 127 REM Transcription Factor Family AT4G33280 39.773 3.28e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele25g0180 B3 1.9e-07 CL0405