Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0178 ATGAGATGGACCACAACTCTCCACGCCCAGTTTGTTCATGCCGTTCAGCTCCTTGGCGGTCATGAAAGGGCTACTCCAAAGTCTGTATTGGAGTTAATGAATGTTAAGGATCTAACCTTAGCCCACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACCGACAAAGGGACAGGTCATGGGCAGATAGATATGGGTTTGAGCCAAAGGCCACCAGAGAACAATGGGGATGTGCATGGAGCTTCAGCCTGTGAGGGAGCCCGTTTATTACCACCATCGCTCCAGAAATCCCTCAGAGCATCGTGGCAATCGTCAGTTGAGACAAGTAAAAATGACAGTAGACAAAACCCCCAAATTGATTTGACTCATTCTCATGATCTCAAGGCAAAGGAAACAAAGGTGGAGGATGAAAGAGATAAGATTTTGCTAGGAACCATATGCTTTCAGTCCAAGAATTCGAGGACATTGTCTTTGATGTCATTATCAGGGCAGTATAAGATTCAATGA 513 0.4522 MRWTTTLHAQFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGQIDMGLSQRPPENNGDVHGASACEGARLLPPSLQKSLRASWQSSVETSKNDSRQNPQIDLTHSHDLKAKETKVEDERDKILLGTICFQSKNSRTLSLMSLSGQYKIQ 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0178 170 MobiDBLite consensus disorder prediction 102 134 - -
Lele25g0178 170 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 119 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lele25g0178 170 Gene3D - 1 55 - -
Lele25g0178 170 MobiDBLite consensus disorder prediction 102 120 - -
Lele25g0178 170 Pfam Myb-like DNA-binding domain 1 51 IPR001005 -
Lele25g0178 170 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lele25g0178 170 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 1 52 IPR006447 GO:0003677
Lele25g0178 170 MobiDBLite consensus disorder prediction 56 85 - -
Lele25g0178 170 FunFam Myb family transcription factor 1 55 - -
Lele25g0178 170 SUPERFAMILY Homeodomain-like 1 53 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0178 Lele-ChrLele25 1074446 1076865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0178 1 101 G2-like Transcription Factor Family AT5G42630 66.667 2.50e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele25g0178 Myb_DNA-binding 3.8e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0178 25 1074446 1076865 Lele02g0874 02 5309448 5311604 CCT
Lele25g0178 25 1074446 1076865 Lele03g0891 03 5172576 5174746 CCT
Lele25g0178 25 1074446 1076865 Lele04g0888 04 5469363 5471543 CCT
Lele25g0178 25 1074446 1076865 Lele27g1903 27 23653294 23656083 hybridization
Lele25g0178 25 1074446 1076865 Lele28g0192 28 1118079 1120382 hybridization