Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0168 ATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCTGACCATAAAATTTCGGAAGGGCGTTATAATGCAAATTATAGGGAGGATACAGATTATTACTTACCATCAACTTCGGGGGATGGCTGGTCAGAGAATGAGAATGAAGATATAGATCGCGCTATTGCACTATCTCTTGTGGAGGAAAATAAGCGAAGAAAGAACGTAAATGACCGCAAGTCACAATTAGAAGAAGATGAACAACTCGCGAGAGCACTGCAAGAAAGTCTAAATGTTGAGTCTCCTCCTAGATATGGAAATGGAAATGGAAATATGTATCAACCGTCAATGCCTGTGTATTTCCCCATGGGGTCCAGGATATGTGCTGGTTGTAATTCTGAGATTGGTTATGGACGATATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCGTTGCCGTGCTTGCAACCTCCCAATCTCTGATTATGAGTTTTCCACTTCTGGGAATTACCCTTATCATAAATCATGCTACAAAGAAAACTACCATCCAAAATGTGATGTGTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAGAAATATTGCCCTTCTCACGAACATGATGGTACTCCACGTTGTTGCAGCTGTGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTATGCCTGGAATGTCTGGATTCTGCTATCATGGATACCAGCGAGTGCCAACCCCTTTACTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGACTGGAGCAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAGGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGACTATCAGCACTGTCTTGAGGCGACCTAGGTTTGGAACAGGCAATAGGGCAGTAGACATGAGAACACAACCCTATAAACTGACTCGACGTTGTGATGTGACGGCAATTCTCATTTTGTATGGCCTTCCCAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGTATCTGTCAGGTTGTGGCGCATATGTGGTTGGAGTCTGAGCTTTCATCTGCATCATCAGCCTCATCCTCATCTTCATCCAATGCATCCAGGAAAGCCAAAAGACCTCAATTTGAGAGGAAGCTTGGGGGATTTTTCAAGCACCAGATCGAATCAGACATTTCCCCTGTTTATGGCGATGGATTCAGGGCAGGCCAACTGGCAGTTCGTAAGTATGGTCTCGAAAACACCCTTCACCATATTTGGATGACTGGGAATTTCCCCCCTTAA 1428 0.4426 MGWLSKIFKGSDHKISEGRYNANYREDTDYYLPSTSGDGWSENENEDIDRAIALSLVEENKRRKNVNDRKSQLEEDEQLARALQESLNVESPPRYGNGNGNMYQPSMPVYFPMGSRICAGCNSEIGYGRYLNCLSAFWHPECFRCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRLEQQVPLLLVERQALNEAREGERNGHYHMPETRGLCLSEEQTISTVLRRPRFGTGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLESELSSASSASSSSSSNASRKAKRPQFERKLGGFFKHQIESDISPVYGDGFRAGQLAVRKYGLENTLHHIWMTGNFPP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0168 475 ProSiteProfiles LIM domain profile. 116 176 IPR001781 -
Lele25g0168 475 PANTHER PROTEIN DA1-RELATED 2 3 474 IPR045218 -
Lele25g0168 475 SMART uim 74 93 IPR003903 -
Lele25g0168 475 SMART uim 43 62 IPR003903 -
Lele25g0168 475 ProSitePatterns LIM zinc-binding domain signature. 118 152 IPR001781 -
Lele25g0168 475 CDD LIM_DA1 118 170 - -
Lele25g0168 475 FunFam Protein DA1-related 1 112 171 - -
Lele25g0168 475 Pfam LIM domain 118 172 IPR001781 -
Lele25g0168 475 Pfam Protein DA1 267 469 IPR022087 -
Lele25g0168 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Lele25g0168 475 SMART lim_4 117 169 IPR001781 -
Lele25g0168 475 Coils Coil 56 76 - -
Lele25g0168 475 Gene3D Cysteine Rich Protein 113 191 - -
Lele25g0168 475 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 110 143 - -
Lele25g0168 475 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0168 Lele-ChrLele25 1018308 1022706 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele25g0168 DA1-like 1.7e-97 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0168 25 1018308 1022706 Lele27g1915 27 23707655 23712137 hybridization
Lele25g0168 25 1018308 1022706 Lele28g0179 28 1046851 1051198 hybridization