Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0166 ATGTTGCCATACATAATTTGGAAAAAGAAACTGAAGAAGGATCAGACCTCCCTTTCTTCTCCAATGCTTCATCGCTGTCTGGTCTCTCTTGTATCGTTCGCAACATCAAATTCCTTTGCTCTCATAACAAGTCTGCCCTTGCTTGAGCTTGCAAGCACCACAACCGCAGACTTGCTTCAAGACTAGTTTGGGGAATCAACGAGCAGATCACCTCCAAGCCCTTCCTACTCCAGCAACAATAGTAGCAACGATGCAGGCAATTTTGAATGCAACATATGCTTTGACTTAGCACAAGACCCTATCATTACTTTATGTGGCCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGGGAATGCCCAGTGTGTAAGGCCATCATTGAGGAGGAGAAATTGGTCCCCTTATATGGGAGGGGTAAATCCTCATCTGACCCAAGGTCGAGGTCTGTTCCTGGTATGAACATACCACATCGTCCATCAGGTCAGCGACCTGAAACGGCCCCGCCACCTGAATCAAACCACTTTCCTCCTCAACATGGGTTTGGATTCATGGGCGGGTTGGGAGGCTTTGCTCCTGCGGCAACAACAAGATTTGGGAATTTTACATTCTCCACAGGGTTTGGTGGTTTTATTCCATCGTTGTTTAACTTTCAACTGCATGGATTTCATGACGGAGCTATGTATGGTAGTCCAACTGGTTTTCACTACGGATTTCCTAATTCATTTCATGGTGGCCACCACCCTCATGGATATTATCATCGTCATACAGGTCAAGGGCAACAGGATTATCTTCTAAAGAGGCTTATTATGATTGTTGTATTCTGTGTTGTTCTTGCTTTTATTTGGCAGTAG 873 0.4479 MLPYIIWKKKLKKDQTSLSSPMLHRCLVSLVSFATSNSFALITSLPLLELASTTTADLLQDXFGESTSRSPPSPSYSSNNSSNDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKAIIEEEKLVPLYGRGKSSSDPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPPQHGFGFMGGLGGFAPAATTRFGNFTFSTGFGGFIPSLFNFQLHGFHDGAMYGSPTGFHYGFPNSFHGGHHPHGYYHRHTGQGQQDYLLKRLIMIVVFCVVLAFIWQ 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0166 290 MobiDBLite consensus disorder prediction 144 182 - -
Lele25g0166 290 ProSiteProfiles Zinc finger RING-type profile. 90 131 IPR001841 -
Lele25g0166 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 144 IPR013083 -
Lele25g0166 290 SUPERFAMILY RING/U-box 84 136 - -
Lele25g0166 290 CDD RING-HC_AtRMA_like 88 132 - -
Lele25g0166 290 SMART ring_2 90 130 IPR001841 -
Lele25g0166 290 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 71 285 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele25g0166 290 Pfam Zinc finger, C3HC4 type (RING finger) 90 130 IPR018957 GO:0046872
Lele25g0166 290 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 74 144 - -
Lele25g0166 290 ProSitePatterns Zinc finger RING-type signature. 105 114 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0166 Lele-ChrLele25 1012205 1013980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0166 88 273 C3H Transcription Factor Family AT1G19310 66.138 1.02e-85 254