Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0141 ATGCCGTTGTATTCAGTCCCAGCTCGTCTTACGCTTCTCGCACTTTTCTCTGCCACCACCTTCTATTGTCTGTACAAATCTCGCCGCCTTAGACACTTGAAACTTCCCCTATATCATAGACGCAATCTTCCCAATACCAGAGGGAAGATTCTCTTCGCTTCTCAAACAGGAACTTCTAAATCCCTTGCTCAGCGTCTTCACCAGCTGCTGGCGGCCAACGACCTTGCTTTCGACCTCGTCGACCCCAAGGACTACGAACCTGAAGACCTTCCTAAAGAAACTCTTGTCCTCATCGTAGCTTCAACTTGGGAAGATGGAAAACCACCTCCAAGTGCCAAATTCTTTGCAACTTGGCTCGCTGAAAGTGCCAAGGATTTTAGGGTGGGCTCTTTGTTGCTTTCAAGGTGCAAATTTTCTATATTCGGCGTTGGAAGCCGAGATTATGGAGCCACTTTTAATGCTGTTGCAAGGGATTTGGCAGAGCAGATGGGGGCGTTGGGGGCGACGGAGATGCTTCCCGTGTGTGAAGGAGATGTCGACACAGGTGATATAGATGGGGTTTTTGATCTTTGGTGTGCAAAGGTGGTTAGCTTTTTGAAGGGTGCTGTTTTAGAAAATGGCGGGGTTTCTGAGTCCAATGTTGGTGAGGAATGCAATACTCAAAGCCTTGAGGATTACGAAGAGGATTCAGAGGAAGAGAACGGTATGGAGTCGGAGATTGTTGATCTTGAGGACATTGCGGGTAAAGCTCCTACGAGGAAGTCAGCGCCAAGAAGTGAAACTAATGGGAAATTGGACGGCAAAAGAGAGATGGTGACTCCAGTGATTAGAGCGAACTTAGAAAAGCAGGGATACAAAATTATTGGTTCACACAGTGGTGTTAAAATTTGTCGATGGACCAAGTCACAACTTCGAGGTCGAGGTGGTTGCTACAAGCACTCATTTTATGGCATAGAGAGTCATAGGTGCATGGAGGCAACCCCTAGTTTGGCATGTGCAAATAAATGTGTTTTCTGCTGGAGGCATCACACAAATCCAGTAGGGAAAAGTTGGCAGTGGAAGATGGATGATCCAATAGAAATTGTAAATTCTGCAATAGACCTACATAAAAATATGATTAAGCAAATGAAAGGAGTTCCTGGAGTCACCTTGGAGCGATTATCTGAAGGTCTCTCTCCTCGCCATTGTGCATTATCACTTGTTGGAGAACCTATCATGTATCCAGAGATCAATGCACTTGTAGATGAGCTGCATAAACGGCAGATTTCTACATTTCTGGTGACAAATGCACAGTTTCCAGTGAAGATTAAGTTACTGAAGCCTATCACCCAGTTATATGTCAGTGTAGATGCAGCTACGAAGGATGCCTTGAAGGCAATAGATAGGCCACTTTTTGGAGATTTCTGGGAACGATTCATTGATTCCTTGACTGCTTTAAAGGAGAAAGAGCAGCGAACTGTTTATCGTTTGACCTTGGTTAAAGGTTGGAACACAGATGAAGTGGATGCTTATTCTAAGCTCTTTAGTATAGGAAAACCTGACTTTGTCGAAATCAAGGGAGTCACATATTGCGGCTCGTCTGCGGCATCAAAATTGACCATGGAAAATGTCCCCTGGCATACTGATGTGAAAGCTTTCTCAGAGGCATTGGCTCTGAAAAGCCAAGGGGAGTATGAAGTTGCCTGTGAGCATGCTCACTCATGTTGTGTCCTCTTGGGGAAAACTGAGAAATTCAAGATTGATGGCCAATGGTACACGTGGATAGACTATGAGAAATTTCATGACCTGGTGGCTTCTGGGAGAAGTTTTAACAGCAGAGATTACATGGCTGCCACGCCATCCTGGGCTGTCTATGGAGCAGAGGAAGGTGGATTTGATCCTGGACAATTGAGATATAGGAAAGAGCGACATCATAAATCAAGCCGGTGA 1929 0.452 MPLYSVPARLTLLALFSATTFYCLYKSRRLRHLKLPLYHRRNLPNTRGKILFASQTGTSKSLAQRLHQLLAANDLAFDLVDPKDYEPEDLPKETLVLIVASTWEDGKPPPSAKFFATWLAESAKDFRVGSLLLSRCKFSIFGVGSRDYGATFNAVARDLAEQMGALGATEMLPVCEGDVDTGDIDGVFDLWCAKVVSFLKGAVLENGGVSESNVGEECNTQSLEDYEEDSEEENGMESEIVDLEDIAGKAPTRKSAPRSETNGKLDGKREMVTPVIRANLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWQWKMDDPIEIVNSAIDLHKNMIKQMKGVPGVTLERLSEGLSPRHCALSLVGEPIMYPEINALVDELHKRQISTFLVTNAQFPVKIKLLKPITQLYVSVDAATKDALKAIDRPLFGDFWERFIDSLTALKEKEQRTVYRLTLVKGWNTDEVDAYSKLFSIGKPDFVEIKGVTYCGSSAASKLTMENVPWHTDVKAFSEALALKSQGEYEVACEHAHSCCVLLGKTEKFKIDGQWYTWIDYEKFHDLVASGRSFNSRDYMAATPSWAVYGAEEGGFDPGQLRYRKERHHKSSR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0141 642 MobiDBLite consensus disorder prediction 221 240 - -
Lele25g0141 642 Pfam Radical SAM superfamily 328 506 IPR007197 GO:0003824|GO:0051536
Lele25g0141 642 PRINTS Flavodoxin signature 97 108 IPR001094 GO:0010181
Lele25g0141 642 PRINTS Flavodoxin signature 135 145 IPR001094 GO:0010181
Lele25g0141 642 PRINTS Flavodoxin signature 160 179 IPR001094 GO:0010181
Lele25g0141 642 PRINTS Flavodoxin signature 49 62 IPR001094 GO:0010181
Lele25g0141 642 SUPERFAMILY Radical SAM enzymes 329 509 - -
Lele25g0141 642 SFLD tRNA wybutosine-synthesizing 268 578 IPR034556 GO:0008033|GO:0051539
Lele25g0141 642 SFLD tRNA wybutosine-synthesizing 268 578 - -
Lele25g0141 642 CDD Radical_SAM 328 504 - -
Lele25g0141 642 Pfam Flavodoxin 50 189 IPR008254 GO:0010181
Lele25g0141 642 Gene3D - 26 206 IPR029039 -
Lele25g0141 642 SUPERFAMILY Flavoproteins 47 199 IPR029039 -
Lele25g0141 642 Pfam Wyosine base formation 511 572 IPR013917 -
Lele25g0141 642 Gene3D Aldolase class I 258 586 IPR013785 -
Lele25g0141 642 ProSiteProfiles Flavodoxin-like domain profile. 48 196 IPR008254 GO:0010181
Lele25g0141 642 ProSiteProfiles Radical SAM core domain profile. 316 559 IPR007197 GO:0003824|GO:0051536
Lele25g0141 642 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 259 588 - -
Lele25g0141 642 MobiDBLite consensus disorder prediction 214 265 - -
Lele25g0141 642 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 42 640 IPR034556 GO:0008033|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0141 Lele-ChrLele25 871988 876843 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0141 25 871988 876843 Lele27g1943 27 23847877 23852019 hybridization
Lele25g0141 25 871988 876843 Lele28g0156 28 884574 889321 hybridization