Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0134 ATGGCCCAAAGCTGTCGTCTTCTCCAATCTACCATTACGTTACCTATTCCCCGCCTTCTCTTGAAGCAACGCTGTCGCGGGAAGAGGATATTTGACGTTCAGTTTCTTGCCGAGATGGCTGAGGTGCCAGACAATGATACTCTTGAAAGGGTCAAGCCTTCTACTGAACAGGATATTTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTGAGAGGAGAAGGTGCAAATTTGGAGGTTTTGAAAGACAAAAAGCTGAAGGGTCAACTTTCTGTTAGAGAAGAGTTATATAGTAAATCTGCTAAAGTTGCTGCCAAGGCGGATAAGTGGCTTGTGCCCAGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAACATCAAACAAGAGGCAATAGCTAAAGAAGTAGATATCTTAAGCTCAAGAAACCAATATGATATTACTTTACCAGAACTTGGTCCGTACACTTTGGAGTTTACTTCTAGTGGCCGGTATATGGCTATTGGAGGGCGTAAGGGCCATTTGGGAATTGTGGACTTGATGAATATGAGCCTAATCAAAGAATTTCAGGTTAGAGAAACAGTACGTGATGTGACATTCTTGCATAATGAGTTGTTTCTTGCTGCTGCGCAGAAAAAGTATACTTACATCTATGACCGTGCTGGCACTGAGCTTCACTGCCTTAAGGAACATGGTTCTGTGTTAAGGCTTCAGTTTCTAAGAAACCACTTCCTTCTGACTTCAATAAACAAGATTGGGCAGCTGCATTATCAGGATGTTACGACGGGTACAATAGTTGGTAATATTCGAACTGGTTTAGGTCGTACTGGTGTGATGCAAGTAAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCTGGCGGTATGGCCACAATGTGGAAACCAACAAGCTCAGCTCCTATTGTCAAGATGTTGTGTCATCATGGTCCTCTCTCAGCTCTGGCATTTCACTCAAATGGACACTTAATGGCCACAGCTGGAAAAGATAAAAAAATAAAGCTTTGGGACTTAAGGAAATTTGAGGTTCTCCAGACACTACATGGCCATGCTAACACCTTGGATTTTAGTCAAAAAGGATTACTTGCATGTGGTACTGGATCTTTTATACAGGTTCTGGGTGATCTTACTGGTTCGCAGAATTATTCTAGGTATATGACTCATTCCATGGTTAAAGGTTACCAAATAGCAAAGTTAATGTTTCGACCATATGAAGATGTTCTAGGCATAGGGCACTCCATGGGTTGGTCCAGCATTCTCATTCCAGGATCGGGAGAACCTAACTTCGATACATGGGTGGCTAATCCATTTGAAACATCTAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGTTGGATAAGCTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATCGGTTCAGTAAAGCCTACTCAGAAAGAGAAGCTGACAAAGAAGGGGAGGGAGGCGGAGATAGAAGCAGCTGTTGAAGCTGCCAAGGACACTAAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGATGGCCAAGAAAAAGAAGGAAGCAATTGAGAAATTGAAGAGGCCTTTCTTGGAAGAAAAAATTAGGGAGGAAGCAATTTCTAGGAAGAAACAAAAAATCAGCGAGGAAGTTAGTTTACCAGAATCATTGAAGAGGTTTGCTGGTAGAAAACCAGCAATGTGA 1722 0.4233 MAQSCRLLQSTITLPIPRLLLKQRCRGKRIFDVQFLAEMAEVPDNDTLERVKPSTEQDISDELDLKIKKYLRGEGANLEVLKDKKLKGQLSVREELYSKSAKVAAKADKWLVPSEGGYLEAEGIEKTWNIKQEAIAKEVDILSSRNQYDITLPELGPYTLEFTSSGRYMAIGGRKGHLGIVDLMNMSLIKEFQVRETVRDVTFLHNELFLAAAQKKYTYIYDRAGTELHCLKEHGSVLRLQFLRNHFLLTSINKIGQLHYQDVTTGTIVGNIRTGLGRTGVMQVNPFNGVVALGHSGGMATMWKPTSSAPIVKMLCHHGPLSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTLHGHANTLDFSQKGLLACGTGSFIQVLGDLTGSQNYSRYMTHSMVKGYQIAKLMFRPYEDVLGIGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGSVKPTQKEKLTKKGREAEIEAAVEAAKDTKMKKKTKGRSKPSKMAKKKKEAIEKLKRPFLEEKIREEAISRKKQKISEEVSLPESLKRFAGRKPAM 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0134 573 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 355 IPR001680 GO:0005515
Lele25g0134 573 SUPERFAMILY WD40 repeat-like 148 420 IPR036322 GO:0005515
Lele25g0134 573 Pfam WD domain, G-beta repeat 317 346 IPR001680 GO:0005515
Lele25g0134 573 MobiDBLite consensus disorder prediction 503 529 - -
Lele25g0134 573 Pfam BING4CT (NUC141) domain 394 472 IPR012952 -
Lele25g0134 573 SMART WD40_4 307 346 IPR001680 GO:0005515
Lele25g0134 573 SMART WD40_4 349 383 IPR001680 GO:0005515
Lele25g0134 573 SMART WD40_4 185 222 IPR001680 GO:0005515
Lele25g0134 573 SMART WD40_4 143 182 IPR001680 GO:0005515
Lele25g0134 573 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 314 348 - -
Lele25g0134 573 Gene3D - 75 254 IPR015943 GO:0005515
Lele25g0134 573 PANTHER WD-REPEAT PROTEIN BING4 49 567 IPR040315 -
Lele25g0134 573 MobiDBLite consensus disorder prediction 545 563 - -
Lele25g0134 573 MobiDBLite consensus disorder prediction 545 573 - -
Lele25g0134 573 FunFam U3 small nucleolar RNA-associated protein 7 146 428 - -
Lele25g0134 573 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Lele25g0134 573 Gene3D - 256 387 IPR015943 GO:0005515
Lele25g0134 573 SMART BING4CT_2 393 473 IPR012952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0134 Lele-ChrLele25 825243 829535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0134 207 369 U-box Gene Family AT1G04510 25.143 6.53e-10 59.7