Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0127 ATGCCTTTCAAGGAATTTGTTCGTGAGCTCAGGGATATTCGGGATGGCATGGGAAATATTTCTATAAGAGGGGTAGAAGCAAATCGCATCCCTTGCCGTGGAAGATCTCTTATTGCCCCTGAATTCTTCTCACCTGCTTCGTTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCACCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGATAACAGAGGAGGTGGTAAATACACCAGAACAGTGTGGTTGGCTGACCTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATGCAGTGTTTTATAAAGAGAGAAAGGGCGACTTCGAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTCTCTGGGGATATGAGTAAAATGCTACTGGCAGCAAAGAAGATTAGACGGACAACATGTACAGAGTTTATAATATCTTTGGTTTCAGATGATTTTTCTAAAGCAAGCAATACTTACGTTGGAAAGCTGAGGTCTAATTTTCTGGGTACCAAGTTCATGATCTTGGATAGTCAACTCCCGCTTGATTCTTCCCTTCCGTTGACTAGTAAATTGCAGCAAAGAATCCATTCAAAGCAAGTTCTTCCTAGGGCTGCTGTAGCAAAGCATAATGTGGCCACGATATCATATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGTACTATGCATTCAATTCCAGTGTCTGCCATCGAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTAGATTCCCTGATGAGCATTTATCTTCCACGCCCATTTCAAAAGAAAGAAAGCCAGGATTTCAGTGTGGCTCCAATAGCGAAGATAAGACCCCAGAATCGAACCACATGACAAGGAAGCCACTGATTTTGAAAAACAAAGCTCCTAGATGGCACGAACAACTGCAATGTTGGTGTTTGAATTTCAAGGGACGTGTTACAGTGGCCTCAGTAAAAAACTTCCAGCTCGTAGCTCCTGCAGAACCTCAACAAAATGTTTCAGCGGCAGAACAGGATAGAGTGATACTACAATTTGGGAAAATTGGAAAGGACATATTCACAATGGATTACCGTTATCCCCTCTCTGCATTTCAAGCCTTTGCGATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAGTGA 1248 0.4495 MPFKEFVRELRDIRDGMGNISIRGVEANRIPCRGRSLIAPEFFSPASLVTQQSPWANLPPELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITEEVVNTPEQCGWLTFPISLKQPGPRETPMQCFIKRERATSKYLLYLGLSPALSGDMSKMLLAAKKIRRTTCTEFIISLVSDDFSKASNTYVGKLRSNFLGTKFMILDSQLPLDSSLPLTSKLQQRIHSKQVLPRAAVAKHNVATISYELNVLRTRGPRRMRCTMHSIPVSAIEEGGTAPTPLKFTRFPDEHLSSTPISKERKPGFQCGSNSEDKTPESNHMTRKPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAPAEPQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0127 415 SUPERFAMILY Tubby C-terminal domain-like 104 415 IPR025659 -
Lele25g0127 415 Gene3D Tubby Protein; Chain A 113 415 IPR025659 -
Lele25g0127 415 ProSitePatterns Tub family signature 1. 343 356 IPR018066 -
Lele25g0127 415 Pfam Tub family 116 410 IPR000007 -
Lele25g0127 415 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Lele25g0127 415 MobiDBLite consensus disorder prediction 289 318 - -
Lele25g0127 415 PANTHER TUBBY-RELATED 49 413 - -
Lele25g0127 415 Pfam F-box domain 55 101 IPR001810 GO:0005515
Lele25g0127 415 Gene3D - 49 101 - -
Lele25g0127 415 ProSitePatterns Tub family signature 2. 400 415 IPR018066 -
Lele25g0127 415 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 325 342 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Lele25g0127 415 PRINTS Tubby superfamily signature 372 391 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0127 Lele-ChrLele25 795302 797283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0127 20 415 TUB Transcription Factor Family AT1G47270 59.512 2.65e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele25g0127 Tub 1.3e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0127 25 795302 797283 Lele27g1958 27 23922682 23926558 hybridization
Lele25g0127 25 795302 797283 Lele28g0138 28 802305 808543 hybridization