Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0122 ATGTTCAGAAACCAGTACGACACGGACGTGACGACATGGAGCCCAGCTGGGAGGCTGTTCCAGGTGGAATATGCGATGGAGGCAGTGAAACAAGGGTCTGCTGCAATAGGGCTCCGATCTAAGACCCACGTGGTTCTCGCTTGCGTTAATAAGGCTAATTCAGAGCTTTCCTCCCACCAGAAGAAGATCTTCAAGGTCGATGACCACATCGGAGTAGCCATTGCTGGCCTCACCGCCGACGGTCGAGTTCTCTCCCGCTACATGCGATCCGAGTGCATCAATTACGCCTACACCTTCGAGTCACCGCTTCCCGTCGGTCGACTCGTCGTTCAACTCGCCGATAAGGCTCAGGTTTGCACCCAACGGTCATGGAAACGACCTTATGGAGTTGGTCTCTTGGTAGCAGGATTAGATGAATCTGGAGCTCACCTCTATTACAACTGCCCCAGTGGGAACTACTTTGAATACCGGGCTTTTGCAATTGGATCTCGTTCACAAGCTGCAAAGACATATTTAGAACGCAGATTTGAGAGCTTCATGGGCTCCTCGCGGGAAGATTTGATCAAGGATGCACTCATTGCTACAAGGGAAACATTACAAGGTGAAAAACTCGGGAGTTCTATATGTACTATTGCTGTGGTTGGAGTTGGTGAGCCATTCCACATATTGGATCAAGAAACTGTACAAAAGTTGATTGATGATTTTGAGATTGTGAGAGAGGAAGAAAGTCCTCCTGCTGAACCTCAGCCAGCGGCTGAGCAGGGTGCTGCTGCCGATCAGGGTTCTAGTGCAGATCAGGGTGCTGCGGCAGACCAAGGAGGTATTGCTCCAATGGATATTTGA 843 0.5018 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYAYTFESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYRAFAIGSRSQAAKTYLERRFESFMGSSREDLIKDALIATRETLQGEKLGSSICTIAVVGVGEPFHILDQETVQKLIDDFEIVREEESPPAEPQPAAEQGAAADQGSSADQGAAADQGGIAPMDI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0122 280 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
Lele25g0122 280 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 10 238 - -
Lele25g0122 280 MobiDBLite consensus disorder prediction 239 280 - -
Lele25g0122 280 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Lele25g0122 280 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Lele25g0122 280 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Lele25g0122 280 FunFam Proteasome subunit alpha type-6 2 232 - -
Lele25g0122 280 Pfam Proteasome subunit 29 214 IPR001353 GO:0005839|GO:0051603
Lele25g0122 280 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Lele25g0122 280 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 232 IPR029055 -
Lele25g0122 280 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0122 Lele-ChrLele25 775968 778240 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0122 25 775968 778240 Lele27g1962 27 23942382 23944598 hybridization
Lele25g0122 25 775968 778240 Lele28g0134 28 786793 789030 hybridization