Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0103 ATGCCACGCACTCGTAGAAATTCAGACAAGGCAATAAATGATAATGACATCCAAAACATAGTTCTGTCGTATCTTATCCATAATTGCTACAAAGAATCAGTGGAGTCATTTATTGCTTGCACTGGAATGAAGCAACCTGCAGATTATTTAGAAGACATGGAGAAAAGAAAAAGAAATGCGCTCAAGGCCATTGAGCTGACTGAACAGCTGGCACAGGATATTCTTGAGAAGAATAAGGACTTACGGTTTGATCTTTTAAGCCTTCATTTTGTTGAGCTTGTCCGCTCTAGGAAATGCACAGAAGCTTTGGAGTTTGCTCAGAGCCAGTTGAGCCCTTTTGGGAAGGAGCAGAAATACATGGAAAAGCTTGAGGACTTTATGGCCCTTCTTGCTTATAAAGAGCCTGAGAAATCCCCAATGTTTCATCTGCTTAGCTTAGAGTACCGGCAGCAGGTTGCAGATAGTTTAAATCGAGCTATTCTTGAACACTGCAACCTTCCCAGCTACACAGCAATGGAGAGGCTTATACGGCAAGCTACGGTAGTTAGGCAGTGCTTAAGTCAAGAGGCTGGAAAGGCATTTGTTGCCACATATGGGATTCGTGTGGTTTGGCCATGGGTGGAAAGTTTTCTACTTGTCCGCCAATCTCCCTATCCATCTGTCGCTGGATCTGCTGACCGGACTCGCATAATGGCTGCTCTCATTTCTCTTCCACTTTCATCTTCATTTTCTATCGTTCGATTCCCTGAAACTACCGTGTTTTCCACTCGCCTGCTTCCTCCAAGGAATCTTCAACAGAGATGCTGTCCTGATAATTATGGATGGTGCACGGTTAAGTGCAGACTTCTCAGCGTCAGTGTGGCTCCTTCCTCAACTCCTCTGACATTGATCAAGGAACCTCACGAGTATTTTGATCAGGCAATCATCACAGTTCGTTCGGGTGATGGAAGCCATGGAGTTATACTTCACAAGGAAGACGTGAAAAGGAAAAAAAACTCCTACAGAAGAGACTCTGATGGATCGCTTATCCTACCTGTGGGTGGGCATGGAGGGGATATGGTGATTTATGCGGATGAGGAAAATATTCATTATTGGAATTTCACAGCAAAAGTCGCTATAATGCAAAACGTGGTGGCAATGTTGATGCCATTGATTAGCTTGTTAGATCTGCCACAGTATAAAAGGAAAAAGATGATGTCGTTGACAACAAATGTGTTGAGAGATGACAATGATAAGGTTTTAGTTCATGGTCGACCAGGAGATGAAGTTAGCTTGGAGTTGATCCTACGAGTTGTCGCTGATGTTGGTCTAGTTGTTTGCCTCAGTGACCAGGTCCGCATCCTTTTCCTGTTTGCTAACCTAAACTTGGGAGCAGGGATGTTTTCATCTGAAGCTACATTAGCAGATTTGCCTGGTCTTATAGATGGGCTCACTTATGAAAGGCACCTCAGGAGGACCCGGCTTCTGGCCCATGTTGTTGATGCAGCCACTAAGAACCCCGTCAATGATTATAGAACTGTCAGGGAATTGACTTGCCATGCTATGGTCCCCATTGGAATTATTTCTGCAGGAGTTGGCATGTATAACCCTGAATACCTTGACCGACCGTACATTGTGATTTTAAATAAGATTGACCTTCCCGAGGAAAAGGACAAGCTTCCATCATTGACTGAAGAAATACTGAGAAATGGGAGCGTTGGTACACCTTCTGAATTAAAACTAACGTCTGAAGCTCCAGATCAGTCCTTATCCAATGAAGTTGCCATCAAGGAAAAGAAACTGGAGGATTATCCCCACCCCTGTCCGTTGTGGTGGCTGCCACTAGTTTTCCATTGCCTACGGTCTTCATTTGGCCTTACCACAGAGCAAGATGAAAAGATCGCAAATTGA 1890 0.4418 MPRTRRNSDKAINDNDIQNIVLSYLIHNCYKESVESFIACTGMKQPADYLEDMEKRKRNALKAIELTEQLAQDILEKNKDLRFDLLSLHFVELVRSRKCTEALEFAQSQLSPFGKEQKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSLNRAILEHCNLPSYTAMERLIRQATVVRQCLSQEAGKAFVATYGIRVVWPWVESFLLVRQSPYPSVAGSADRTRIMAALISLPLSSSFSIVRFPETTVFSTRLLPPRNLQQRCCPDNYGWCTVKCRLLSVSVAPSSTPLTLIKEPHEYFDQAIITVRSGDGSHGVILHKEDVKRKKNSYRRDSDGSLILPVGGHGGDMVIYADEENIHYWNFTAKVAIMQNVVAMLMPLISLLDLPQYKRKKMMSLTTNVLRDDNDKVLVHGRPGDEVSLELILRVVADVGLVVCLSDQVRILFLFANLNLGAGMFSSEATLADLPGLIDGLTYERHLRRTRLLAHVVDAATKNPVNDYRTVRELTCHAMVPIGIISAGVGMYNPEYLDRPYIVILNKIDLPEEKDKLPSLTEEILRNGSVGTPSELKLTSEAPDQSLSNEVAIKEKKLEDYPHPCPLWWLPLVFHCLRSSFGLTTEQDEKIAN 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0103 629 PANTHER RAN BINDING PROTEIN 9-RELATED 11 191 - -
Lele25g0103 629 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 56 101 IPR006595 -
Lele25g0103 629 SMART ctlh 49 101 IPR006595 -
Lele25g0103 629 Coils Coil 50 70 - -
Lele25g0103 629 ProSiteProfiles LIS1 homology (LisH) motif profile. 13 45 IPR006594 GO:0005515
Lele25g0103 629 Gene3D GTP1/OBG domain 299 375 IPR036726 -
Lele25g0103 629 SMART toby_final6 97 192 IPR013144 -
Lele25g0103 629 Pfam CTLH/CRA C-terminal to LisH motif domain 60 183 IPR024964 -
Lele25g0103 629 Gene3D - 406 583 IPR027417 -
Lele25g0103 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 552 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0103 Lele-ChrLele25 668494 678510 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0103 25 668494 678510 Lele27g1978 27 24040685 24043676 hybridization
Lele25g0103 25 668494 678510 Lele28g0114 28 687834 691687 hybridization