Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0099 ATGACCCCTATGAGGCGTGGGAGCCGTCCGATCAGGGGGAGTGATGATGAAAAGCAAGATTTGAGCGGCGATGGACGCGCCCGTGAGAAAATGCTCGACGCTGGTGCATATTCGGGGAAACTTCTCTGCTATGGATTGTATGCCTCAATTGGACACTGTTTCAGCTTGTGGGTGCAACAAATGGCTGGCTTCTTCTCTCTAGGCCCACAGAAACAACAAGAAGAAAAGGAAGATAACAACAACAGTAACAGCCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTCGAGATATGGCCTCAGTCCTATCAACCTAATCACAACTTGAACAACTACTACTCGTTTGGGGCGGGTCCTAGTCGAAGAAACTCCTCCCACGACGACGTCGTCTCTGTCGACTCCACGAGGTTCGGATTCACGGTCATGCGGTCTGGAGGGTTGGAACTGGGACAATTCCCACCAGAGGTGAACTCTTCGGCCGTGTTTCGCTGTGTGAGAGTAAGTTCAATGGACAGCCCAGAGGACCAGTACGCGTATCAAACGGCTGTGAACATCGGTGGTCACCTTTTCAAGGGAATTCTGTATGACCACGGCCCAGAAGGCGCTTACACCACAGGAGGTGAGAGCTCCTCCGGTGGAGCTGAAGCTCAACAATTAAATCTCATAACCGCGTCGACCACCACGCACACGGCGACAACCAGCGCCAACCCATTTGATCCATCTTCGCTATACCCGGCTCCTCTCCATGCCTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGGTCCTAA 798 0.5201 MTPMRRGSRPIRGSDDEKQDLSGDGRAREKMLDAGAYSGKLLCYGLYASIGHCFSLWVQQMAGFFSLGPQKQQEEKEDNNNSNSLFLFRNEEIYNKGFEIWPQSYQPNHNLNNYYSFGAGPSRRNSSHDDVVSVDSTRFGFTVMRSGGLELGQFPPEVNSSAVFRCVRVSSMDSPEDQYAYQTAVNIGGHLFKGILYDHGPEGAYTTGGESSSGGAEAQQLNLITASTTTHTATTSANPFDPSSLYPAPLHAFMAGTQFFPPPRS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0099 265 Pfam Domain of unknown function (DUF702) 141 202 - -
Lele25g0099 265 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 140 251 IPR007818 GO:0003700|GO:0006355
Lele25g0099 265 MobiDBLite consensus disorder prediction 9 25 - -
Lele25g0099 265 MobiDBLite consensus disorder prediction 1 25 - -
Lele25g0099 265 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 153 201 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0099 Lele-ChrLele25 625259 627705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0099 148 265 C2H2 Transcription Factor Family AT3G51060 55.396 3.54e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele25g0099 DUF702 5.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0099 25 625259 627705 Lele01g0961 01 5552176 5553625 CCT
Lele25g0099 25 625259 627705 Lele03g0957 03 5572198 5576493 CCT
Lele25g0099 25 625259 627705 Lele04g0956 04 5916811 5918198 CCT
Lele25g0099 25 625259 627705 Lele27g1986 27 24099494 24101929 hybridization
Lele25g0099 25 625259 627705 Lele28g0108 28 636758 638107 hybridization