Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0097 ATGAAGATCCTCTGCGACGTCTGTAATAACCACGAGGCTTCCCTATTCTGCACTGCCGACGAAGCCGCCTTATGTGATGCCTGCGACCACCGGGTCCACCATGCCAACAAGCTCGCCTCCAAGCACCAACGCTTTTCCCTTCACCGCCCTTCTCCCAACCAATTCCCTCTCTGCGATATCTGCCTGGAGAGAAGAGCCTTCGTGTTCTGCCAACAGGACAGAGCAATTCTATGCAAAGACTGTGACACGCCGATTCACTCGGCCAACGAGCACACCCGGAAGCACAATAGGTTTCTTCTAACGGGGATTAAGCTCTCTGCTGCTGCTACGCCTTATTCACCATTAACCTCCAATCCTGTTTTGACAAATGGTTCGGATTCCCTGTCTAATTCCAAGTCCCAGAATTTAGCGAAGAACTCTGTTTCTGCTCCTTCTGCCATCTCACATCCCACTTCAGTGAACCAGACCTCACCTTCAACAGCATCAACCCATGCCACAATTAACAAGGCTGGGGGAAACCTGTCAACGAACGAAGGGATTGTTTCCACGAGTAGCATATCTGAGTATTTGATAGAGACTCTCCCGGGCTGGCAGGTCGACGACTTTCTCGATTCTTCTGCTATTCCGTTTGGTCTCAGCAAGAGTGTTGATATGTTGTCTGTGTTCGATGCTGATATAGAGGGAAATATGGGTTCTTTCTCTCCCGAGAGTATGGGGATCTGGGTTCCTCGGGCACCCACTTCTCTGTTTACCCCACAAGTGGATCGGCAGATCAAGTTCCAAGAGACAAAAGAGGCGACCAATATTGAGGCCAGCAGATCATCAAGGTCGAGGGATGATAATTTCATAGTTCCACAAATCAACCCTCCTATTGGTTCCAAGAGATCCAGACTTCTTTGGTAG 903 0.4961 MKILCDVCNNHEASLFCTADEAALCDACDHRVHHANKLASKHQRFSLHRPSPNQFPLCDICLERRAFVFCQQDRAILCKDCDTPIHSANEHTRKHNRFLLTGIKLSAAATPYSPLTSNPVLTNGSDSLSNSKSQNLAKNSVSAPSAISHPTSVNQTSPSTASTHATINKAGGNLSTNEGIVSTSSISEYLIETLPGWQVDDFLDSSAIPFGLSKSVDMLSVFDADIEGNMGSFSPESMGIWVPRAPTSLFTPQVDRQIKFQETKEATNIEASRSSRSRDDNFIVPQINPPIGSKRSRLLW 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0097 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele25g0097 300 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Lele25g0097 300 Gene3D Classic Zinc Finger 1 100 - -
Lele25g0097 300 SMART bboxneu5 53 100 IPR000315 GO:0008270
Lele25g0097 300 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lele25g0097 300 Pfam B-box zinc finger 55 93 IPR000315 GO:0008270
Lele25g0097 300 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lele25g0097 300 MobiDBLite consensus disorder prediction 262 288 - -
Lele25g0097 300 CDD Bbox1_BBX-like 57 100 - -
Lele25g0097 300 CDD Bbox1_BBX-like 4 47 - -
Lele25g0097 300 FunFam B-box zinc finger protein 21 1 98 - -
Lele25g0097 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 290 - -
Lele25g0097 300 MobiDBLite consensus disorder prediction 121 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0097 Lele-ChrLele25 593852 595005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0097 1 300 C2C2-CO-like Transcription Factor Family AT1G75540 43.109 1.35e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele25g0097 zf-B_box 8e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0097 25 593852 595005 Lele27g1989 27 24124197 24126161 hybridization
Lele25g0097 25 593852 595005 Lele28g0104 28 608343 609410 hybridization