Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0084 ATGGCTTTCGTCGAAGATAAGATTAAAACCGGAGGATTCATTGTTGGGGGTCAATCTCTAGCTGCTGAGATGAAGATGTTGAAAGAAATGCAGGATCAATCTGGGGTCCGAAAGAGTATAAATTCCGAGTTATGGCATGCTTGCGCTGGTCCACTCGTAGGCTTGCCTCAGGTGGGGAGTCTGGTGTATTACTTCCCTCAGGGACACAGTGAACAGGTGGCGGCTTCCACTAGAAGAACAGCAACCTCACAGATTCCAAACTATCCGAATCTTCAATCTCAGTTGCTTTGCCAAGTTCAAAATGTTGCACTTCATGCAGATAAAGACACGGACGAAATATACGCTCAAATGAGTCTCCAACCATTGAATTCTGAAAAAGATGTCTTTCCTATATCTGATTTTGGGATGAAGCCTAGTAAACATCCAAGTGAATTTTTCTGCAAAACATTGACTGCTAGCGATACAAGCACGCACGGTGGCTTTTCTGTACCTCGGAGAGCTGCAGAAAAGCTCTTTCCTCCACTGGATTATACCATTCAACCACCAACCCAAGAACTCGTTGTCCGAGACTTACATGATAATACCTGGACATTCCGACATATTTACCGGGGTCAGCCGAAGAGACATCTTCTCACAACAGGATGGAGCTTATTTGTTGGCTCAAAGAGGCTTAAAGCTGGGGATGCTGTTCTTTTTATCAGGGACGAGAAATCACAATTGCTAGTTGGTCTTAGGCGTGCAAATCGTCAACAGACAACATTGCCGTCATCTGTCCTTTCTGCTGATAGCATGCATATCGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAACCATAGCCCGTTTACCGTTTTCTACAACCCAAGGGCATGCCCTTCAGAATTTGTTATTCCGCTGGCTAGATACAGAAAAGCTGTATACGGTACCCAACTTTCAGTTGGCATGAGATTTGGTATGATGTTTGAGACAGAGGAATCGGGGAAGCGCAGGTATATGGGCACTATAGTTGGTACCAGTGACTTGGATCCTTTGAGGTGGCCTGGTTCGAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGCGATAAGCAGAATACTAATAGAGTTAGTGCTTGGGAAATTGAGACTCCTGAAAGTCTTTTTATCTTTCCTTCTTTGACTGCGAGTCTGAAACGACCATTTCAATCTGGATCTTTTGGTACAGAAAATGAGTGGGGGGCTTTGTTAAGAAGGCCTTTTATACAAGTTCCTGAAAATGCAAATTTGGAGCTCCCAAACTCTTTACAAAATCTATATATGGAACACCTGATGAAAGTTCTTTTCAAACCTCAACTGGTGAACAATCCTGGAGCCTTCTCATCAGTCGTGCAGCAAGAATCTGCCGCCAAGAGTGATCTTTCACAAGATTTGAAGAAGACACTCGCGACAGATACCCGAAAAGCTCGTATTGTATGTTCAGGCATACCGCCAAAAGATCTAGATCATTCTCAATCTCTCCCTGATCAATGTAATGCTTTCAACTTGCACTCCCTGTTAAAAAGTGATCAAACCGGGAAATTGCATCCTCTGCCTAAAATTGAGAATGCTCCATCTTCTGGAGCAGTTTCTGATAAAACAAAAGTAGAATCTGTGGACTTAACTGATCATGTTATTGACTGTCCTTCAATAGAAGGATGCAACATGGAAAAAGTGGCCGCGAACCCTATGAGCCCACCTGGCCATGCGAGTCAAGTGGCATTGCTTAATCAAAACCAGTGTCCATGGCCCACGCAGCCTCAGTTCGAATCAACAATGTCTCCTTCTCAGATGGTTGATATTCCTCAATCTGATTATGCTCTTTTAAATGGCCTTCTTCCTCAGGCAGACGTTGATGAATGGATGTTGTATTCCTCCTGCCAATCTTTTCCTGGAGTGAGTAGATCAGCTGGGCCTTTGCAGGAACAGTCTCTACTTCTCCCACAAGCAGTTAATACCCCTTTACCCTCTGCTAGTCAAGAAATGTGGGATCATTATCTTAGAAATTTCAAGTCGTCACCTCAAGCGGACCAGTTAACACCCATCTCACGGCAAGGGTTGCAGAACTTTAATTGTATATCTAATTCAAACAATCTGAGGGATCTATCAGCTGAGAGCATTAATCAAAGCGGGGTGTATAGTAGCGTCAATGTTGATGCCAGTAACAGTGTAAGTACCATGGTTGATCCTTCAACTTCGAGTACCATTTTGGATGATTTTTGCGTGTTGAAGGATGGGGAGTTCCAGAACCCATCAGATTGCATGCTTGGCAACGTAAGCTCGAGCCAGGACGTCCAGTCTCAGATAGCCTCCGCAAGTCTAGCCGAGTCACATGTTTTCTCTCTGCAAGACAACTCAGTTGGTGGTACATCTTCGAGCCACGTTGATTTCGATGAAAGCAGCTTTCTGCAGAATAACTCATGGGCGCAAGTTGCTGCACCCGTGCGAACCTACACCAAGGTTCAGAAGGCAGGGTCAGTAGGAAGATCCTTGGATGTAACCACTTTTAAGAACTACGGGGAACTGATCTCCGCAATTGAACGGATGTTTGGACTTGAGGGTCTGCTGAACGACACCAAAGGTTCAGGATGGAAATTGGTATATGTAGATTATGAAAACGATGTTCTGCTCGTCGGGGATGATCCTTGGGAGGAATTCGTGGGGTGTGTCCGGTGCATTAGGATTTTATCGCCAGTTGAAGTAAAACAGATGAGCGAGGAGGGAATGAAGCTTCTGAACAGTGCTGCGGCCGTGCAACAGTTGAATGGACCCATGTCAGGTGGCTGCCCTTAG 2817 0.4526 MAFVEDKIKTGGFIVGGQSLAAEMKMLKEMQDQSGVRKSINSELWHACAGPLVGLPQVGSLVYYFPQGHSEQVAASTRRTATSQIPNYPNLQSQLLCQVQNVALHADKDTDEIYAQMSLQPLNSEKDVFPISDFGMKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLKAGDAVLFIRDEKSQLLVGLRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANHSPFTVFYNPRACPSEFVIPLARYRKAVYGTQLSVGMRFGMMFETEESGKRRYMGTIVGTSDLDPLRWPGSKWRNIQVEWDEPGCGDKQNTNRVSAWEIETPESLFIFPSLTASLKRPFQSGSFGTENEWGALLRRPFIQVPENANLELPNSLQNLYMEHLMKVLFKPQLVNNPGAFSSVVQQESAAKSDLSQDLKKTLATDTRKARIVCSGIPPKDLDHSQSLPDQCNAFNLHSLLKSDQTGKLHPLPKIENAPSSGAVSDKTKVESVDLTDHVIDCPSIEGCNMEKVAANPMSPPGHASQVALLNQNQCPWPTQPQFESTMSPSQMVDIPQSDYALLNGLLPQADVDEWMLYSSCQSFPGVSRSAGPLQEQSLLLPQAVNTPLPSASQEMWDHYLRNFKSSPQADQLTPISRQGLQNFNCISNSNNLRDLSAESINQSGVYSSVNVDASNSVSTMVDPSTSSTILDDFCVLKDGEFQNPSDCMLGNVSSSQDVQSQIASASLAESHVFSLQDNSVGGTSSSHVDFDESSFLQNNSWAQVAAPVRTYTKVQKAGSVGRSLDVTTFKNYGELISAIERMFGLEGLLNDTKGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPVEVKQMSEEGMKLLNSAAAVQQLNGPMSGGCP 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0084 938 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Lele25g0084 938 ProSiteProfiles PB1 domain profile. 824 908 IPR000270 GO:0005515
Lele25g0084 938 CDD B3_DNA 145 246 IPR003340 GO:0003677
Lele25g0084 938 SUPERFAMILY DNA-binding pseudobarrel domain 134 275 IPR015300 -
Lele25g0084 938 FunFam Auxin response factor 144 248 - -
Lele25g0084 938 SUPERFAMILY CAD & PB1 domains 828 903 - -
Lele25g0084 938 FunFam Auxin response factor 310 384 - -
Lele25g0084 938 FunFam Auxin response factor 820 913 - -
Lele25g0084 938 Gene3D - 144 247 IPR015300 -
Lele25g0084 938 Pfam AUX/IAA family 821 909 IPR033389 -
Lele25g0084 938 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Lele25g0084 938 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 914 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele25g0084 938 Pfam Auxin response factor 272 355 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele25g0084 938 SMART B3_2 146 248 IPR003340 GO:0003677
Lele25g0084 938 Gene3D - 310 384 - -
Lele25g0084 938 Gene3D - 820 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0084 Lele-ChrLele25 498542 503690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0084 19 924 B3 DNA Binding Superfamily AT1G19850 58.944 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele25g0084 AUX_IAA 8.7e-10 CL0072