Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0050 ATGACTCAAGACGTGGAAATGAAAGATCATGCTCCTCCCTCGCGTTCTGTTTCTTCAGCTGTTCCATCCACTTTGCAGCATTTGAAAGAAATAGCACCCCTTATCGAGACCGGTTCCTACTCAAAGGAAGTTCGCAGAATTGCTCGGGCTATTCGCCTTACAATTGCTTTGAGGCGGAAATTGACAGCATCGGTGCTCTCATCTTTCCTCGACCACATTCTCACTCCAGGTTCTGAGGCTCACACCAGATTGTCCGCCTATGTTCCCAAGGAGGACGATCATGAGATGGAAGTGGATACTGCAACTTCTGCTGTTCAAATCCCATCTAAGCACCTACTGCCTGAACTAGAGATCTACTGCTACCTGCTCGTACTACTGTTTCTTATTGATCAGAAAAGATACAACGAGGCCAAAAACTGTTCCTCAGTGAGTATTGGTCGACTGAAGAATCTGAACAGAAGAACGGTTGATGTCATTGCTTCCAGATTATACTTCTATTACTCATACAGCTATGAACTTACGGGAGACCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCATCGTATTGCCACTCTACGCCACGATGAGCTGGGTCAGGAAACACTTCTTAATCTTTTACTTCGCAATTACCTCCACTACAACCTATATGACCAAGCAGAGAAGTTAAGGTCTAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGGAAGATTCGTACCATACAGTTGGAGTATACCGATGCAAAAGAGTCACTCCTGCAGGCTGCCCGGAAAGCTCCAGTTGCAGCACGAGGCTTTCGTATTCAATGTAATAAGTGGGCTGTAATTGTGCGCCTGCTGTTGGGAGAAATACCTGAAAGGACTATCTTTATGCAGAGAGGTGCGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAACGCGGTGCGCATTGGTGATCTGGAGCTGTTTAGGAATGTTGCAGAAAAGTTTGCTGACACTTTTGATACGGATGGAACTCATAATTTGATTGTTCGGCTGCGACATAATGTTATCAGAACTGGTTTACGCAACATCAGCGTGTCTTATTCTCGCATCTCGCTTGCTGATGTAGCTCAAAAATTAAGGTTCAACTCTGCCAACCCTGTTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCCGCGATGGGGCAATTGAAGCTACATTGGATCATGCTAATGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAACGAACCTCAGTTGGCCTTCAATTCTCGAATTGCCTTCTGTCTTAACATGCACAATGAAGCCATTAGGGCACTGCGTTTCCCACCTAACACACACAAGGAAAAGGAAAGTGCTGAGAAAAGGAGAGAGAGGCAACAACAAGAGCAAGAACTAGCCAAGCACATAGCAGAGGAGGATGACGACGATTTCTGA 1464 0.4577 MTQDVEMKDHAPPSRSVSSAVPSTLQHLKEIAPLIETGSYSKEVRRIARAIRLTIALRRKLTASVLSSFLDHILTPGSEAHTRLSAYVPKEDDHEMEVDTATSAVQIPSKHLLPELEIYCYLLVLLFLIDQKRYNEAKNCSSVSIGRLKNLNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTIFMQRGAEKALRPYFELTNAVRIGDLELFRNVAEKFADTFDTDGTHNLIVRLRHNVIRTGLRNISVSYSRISLADVAQKLRFNSANPVADAESIVAKAIRDGAIEATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAIRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0050 487 MobiDBLite consensus disorder prediction 451 480 - -
Lele25g0050 487 Pfam PCI domain 311 416 IPR000717 -
Lele25g0050 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 7 478 - -
Lele25g0050 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Lele25g0050 487 MobiDBLite consensus disorder prediction 1 22 - -
Lele25g0050 487 MobiDBLite consensus disorder prediction 451 487 - -
Lele25g0050 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Lele25g0050 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lele25g0050 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Lele25g0050 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Lele25g0050 487 Gene3D - 243 438 - -
Lele25g0050 487 SMART PINT_4 345 438 IPR000717 -
Lele25g0050 487 Coils Coil 454 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0050 Lele-ChrLele25 306720 309991 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0050 25 306720 309991 Lele01g1164 01 6925685 6933670 CCT
Lele25g0050 25 306720 309991 Lele02g1431 02 18609247 18613340 CCT
Lele25g0050 25 306720 309991 Lele03g1178 03 6899671 6906376 CCT
Lele25g0050 25 306720 309991 Lele04g1412 04 19471437 19475527 CCT
Lele01g1175 01 6999030 7003466 Lele25g0050 25 306720 309991 CCT
Lele02g1442 02 18691502 18695355 Lele25g0050 25 306720 309991 CCT
Lele03g1190 03 6973599 6978072 Lele25g0050 25 306720 309991 CCT
Lele04g1424 04 19551137 19554556 Lele25g0050 25 306720 309991 CCT
Lele25g0050 25 306720 309991 Lele27g2036 27 24403034 24406313 hybridization
Lele25g0050 25 306720 309991 Lele28g0060 28 332220 336525 hybridization