Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0049 ATGGGACTTGGTTTCTTCAAGGCGCTTTGCTGTAGCAACGACCATCATGAAATTCACATCGACTCGTCGGACTCCTCTCCCGGCCGGCCTCCCAGGCAGAGGTCCAGGGAACATCAACATGACGTTGTCAAAGCAGCACCTGTTTCGAATTATTCCAAGCCCAAACCAACGGCTGCTCATTCGCAAGCACAAATAGGGCCTGTGCTGGGAAAACCCTACGTGGATATAAGTATGATGTACGAGCTGGATAAAGAGCTGGGGAGAGGGCAGTCGGGGGTGACATATCTGTGCACAGAGAAGGCGACAGGGAAAAAGTACGCGTGCAAGAGCATAGCGAGGAGAAAGCTGACGAAGAAGGAGGAAATAGAGGACGTGCGAAGAGAGATACTGATACTGCAGCATCTCTCGGGGCAGCCAAACATTGTGGAATTCAGGGGCGCATACGAGGACCGGCAGAACGTGTACCTGGTCATGGAACTGTGCACCGGAGGAGAGCTGTTTGATCGCATCATCGCCAAAGGCAATTATTCCGAGAAGGAAGCCGCGGCGCTGTTCCGGCAGATCGTGACAGTGGTTCATGTGTGCCATTTCATGGGAGTCATGCATCGGGACCTGAAGCCTGAGAATTTCTTGATGGCCAGCAAGCACGATCACGCCCCTATCAAAGCCACCGATTTTGGACTCTCCGTCTTCATTGAGCTCGGTAAAGAGTATAAGGAAGTTGTGGGAAGTGCGTATTATGTGGCGCCGGAGGTTCTAAAACGGAGTTATGGAAAGGAGATAGATGTGTGGAGTGCAGGAGTCATTTTATACATTCTCCTTAGTGGGGTGCCTCCATTTTGGGCTGAGAACGAGAAAGGCATATTTGATGCTATTCTGGACGGCAAACTGGATCTTGAAAGCCAACCATGGCCATGTATTTCAGCTTCCGCCAAGGATTTGATCAGGAAAATGTTGACATATGATCCCAAGAAACGCATCACAGCTGCTGATGCCCTTGAACATCCATGGATGAAGGTGGGTGGTCAAGCATCTGACAAACCTATAGACAGTGCCGTTTTAATAAGGATGAAACAGTTCAGAGCAATGAACAAAATGAAGAAACTTGCCCTGAAGGTGATAGCAGAAAACCTCTCAGAGGAAGAAATCAAGGGCTTGAAACAAATGTTTAACAATATGGATACAGATAACAGTGGCACGATCACACTTGAAGAACTTAGAGCTGGATTGACCAAATTGGGGTCTAAACTGAACGAATCTGAGATACGGCAGCTGATGGATGCTGCTGATGTTGACAAGAATGGAACTATTGATTATTATGAATTCATAACTGCCACCATGCATCGGCATAGACTCGAGAAGGAAGAGAACTTGTTCAAGGCCTTCCAATACTTCGACAAGGATAACAGTGGATTTATCACAAGAGAGGAGCTTAGGCAGGCTTTGACTGAATATGGGATGGGGGATGAAGCTACGATAGATGAAGTGATTGACGATGTGGACACTGATAAAGATGGCAGAATCAATTACGAAGAGTTCGTGGCTATGATGAAGAACGCGGGATAA 1566 0.4764 MGLGFFKALCCSNDHHEIHIDSSDSSPGRPPRQRSREHQHDVVKAAPVSNYSKPKPTAAHSQAQIGPVLGKPYVDISMMYELDKELGRGQSGVTYLCTEKATGKKYACKSIARRKLTKKEEIEDVRREILILQHLSGQPNIVEFRGAYEDRQNVYLVMELCTGGELFDRIIAKGNYSEKEAAALFRQIVTVVHVCHFMGVMHRDLKPENFLMASKHDHAPIKATDFGLSVFIELGKEYKEVVGSAYYVAPEVLKRSYGKEIDVWSAGVILYILLSGVPPFWAENEKGIFDAILDGKLDLESQPWPCISASAKDLIRKMLTYDPKKRITAADALEHPWMKVGGQASDKPIDSAVLIRMKQFRAMNKMKKLALKVIAENLSEEEIKGLKQMFNNMDTDNSGTITLEELRAGLTKLGSKLNESEIRQLMDAADVDKNGTIDYYEFITATMHRHRLEKEENLFKAFQYFDKDNSGFITREELRQALTEYGMGDEATIDEVIDDVDTDKDGRINYEEFVAMMKNAG 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0049 521 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Lele25g0049 521 Pfam Protein kinase domain 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0049 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lele25g0049 521 MobiDBLite consensus disorder prediction 19 62 - -
Lele25g0049 521 FunFam calcium-dependent protein kinase 1 166 345 - -
Lele25g0049 521 Pfam EF-hand domain pair 455 518 IPR002048 GO:0005509
Lele25g0049 521 Pfam EF-hand domain pair 386 446 IPR002048 GO:0005509
Lele25g0049 521 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Lele25g0049 521 FunFam Calcium-dependent protein kinase 1 82 165 - -
Lele25g0049 521 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Lele25g0049 521 Gene3D - 345 520 - -
Lele25g0049 521 Gene3D Transferase(Phosphotransferase) domain 1 166 344 - -
Lele25g0049 521 ProSitePatterns EF-hand calcium-binding domain. 501 513 IPR018247 -
Lele25g0049 521 ProSiteProfiles Protein kinase domain profile. 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0049 521 SMART serkin_6 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g0049 521 Gene3D Phosphorylase Kinase; domain 1 82 165 - -
Lele25g0049 521 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Lele25g0049 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 513 - -
Lele25g0049 521 SMART efh_1 421 449 IPR002048 GO:0005509
Lele25g0049 521 SMART efh_1 385 413 IPR002048 GO:0005509
Lele25g0049 521 SMART efh_1 492 520 IPR002048 GO:0005509
Lele25g0049 521 SMART efh_1 457 485 IPR002048 GO:0005509
Lele25g0049 521 FunFam Calcium-dependent protein kinase 1 346 521 - -
Lele25g0049 521 ProSiteProfiles EF-hand calcium-binding domain profile. 489 521 IPR002048 GO:0005509
Lele25g0049 521 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Lele25g0049 521 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
Lele25g0049 521 SUPERFAMILY Protein kinase-like (PK-like) 80 339 IPR011009 -
Lele25g0049 521 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Lele25g0049 521 SUPERFAMILY EF-hand 377 517 IPR011992 -
Lele25g0049 521 CDD STKc_CAMK 80 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0049 Lele-ChrLele25 287960 292619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0049 68 520 EF-hand Containing Proteins AT3G20410 73.731 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele25g0049 Pkinase 1.7e-76 CL0016