Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0043 ATGTCGCCGGCGGAGACCAACAGGGTATTGAATGCGGAGGAAGGCAAGCATTACCCTTCCCCACTCGCGTCACATGAGGACGTGGTCAAGGACCCCACCCTATTCTGGGACACTCTCAGGCGTTTCCACTTCTTCATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGCAAGGAACTGGATTTGCACGTTCTTTACGTGGAGGTTACGAGGAGGAGTGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTGTTCAGGTAGTTGACTGTCCGTTCCCCATTTTTGCTCTTTTTTCTTTGGGTATCGATGTTCGTGTTGTGTTTTCCCCCCTTTCTTTTACTGCTGCATTTTCTGTCAGCAACCAGTCATGGAGACCCGAATTAGCTATTGTGGAATACTCACCCCAGCGGATAAACGAGTGTCCCGAGTCCCATGAAGAAATGGTTATGTTGTCTGCACATTTGCGGAATGCAGATAATTGGGGCGGAGAGGTGAAGGGAATGATAGAGGGGAAATTCGACTGTGGGTATTTGGTGTCAGTGAAGGTGGGGACAGAGATTCTGAGAGGGGTGCTTTACCATCCTCAGCAATCGGAAACTCCGCAGAGTAGGAATGCGATGGTGGCCTACAATGGAAAAGGAGGGCGCGCGGCTAGGAGGAGGAGGAACAGAAGGAGGTGGGACCCAAACTACCCGAAGCCCAACAGAAGTGGGTATAACTTCTTTTTCGCGGAGAAGCATTACAAGCTGAAAGCCCTCTATCCCAACAGAGAGAGGGAATTTACAAAGATGATCGGCCAGTCATGGAGCAGTCTTAGCCACGAGGAGAGAATGAAGCATAATGAGTGGACGATTGATGTGTTGGACAGCATTAAGGTATCTTCTGACTCTGAAATATCAAATGATGCATATATTATTGTGGGAAATGACTCAAACAAGCTACGCCCACAGCCTGGTTTCCGAGTTATGAGTCAGAAGGTTGAAGTTTACAACGAGGTTCTTAGTAGACTTAAGGAATTGAATGTCCCGGAGGCTGCGGTTCCTGGCTTTGAGGATGAGCTCTGGACGCATTTCTATCGACTTCCAGCTAGGTATGCTGTGGATATGAACGTGGAGAGAGCTCAAGATGTCATTGTGCATAAAAGGTTGCTTCATATGGCACATGATCCCGCTACAAGACCTGCTGTTGAATGCCGTCTAGTTCAGGTTCGATCTCCTTCTGGTGTGAATTCTAGTGATTCTCTTCATTCAAACTCACAAAGAAAAGCCAGTCATCAAGATTCTCATATTACAGGCAACATGAGGCATGGTGGTGAAGGTAGCAGATTTTGGTGTAGCAAGGGTGGAAGATCAGAGGAAGTAGGAAGTGATATGCTGTTGCTTTTACCACACAATAAATTGATTGTAATAAACTGTGCTTCGCTTGATATATGGAAGGTTATTGAACACAAGCCATATAATCACAAAGCCAATGTGTTCAGCTTTGGAATTACTCTGTGGGAGCTGCTCACGGGGAAGCTTCCGTATGAGCATTTGTCACCATTCAGCAGTTGGAGTGCTCCACAAGGTTTTGAGACCCAAAATTTCGACGCGAACACATCCAATGTTAGTAGAGTTGATGAACCGTTGCTGGCACCAAGACCCTTCTTTCAGACCCGAATTCTCAGCAATTCTGGAATTTCTGCGCCATTTTTCCCAGAATGTATGTAG 1716 0.4691 MSPAETNRVLNAEEGKHYPSPLASHEDVVKDPTLFWDTLRRFHFFMGTKFMIPVIGGKELDLHVLYVEVTRRSGGGREEMEGSGECVQVVDCPFPIFALFSLGIDVRVVFSPLSFTAAFSVSNQSWRPELAIVEYSPQRINECPESHEEMVMLSAHLRNADNWGGEVKGMIEGKFDCGYLVSVKVGTEILRGVLYHPQQSETPQSRNAMVAYNGKGGRAARRRRNRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWSSLSHEERMKHNEWTIDVLDSIKVSSDSEISNDAYIIVGNDSNKLRPQPGFRVMSQKVEVYNEVLSRLKELNVPEAAVPGFEDELWTHFYRLPARYAVDMNVERAQDVIVHKRLLHMAHDPATRPAVECRLVQVRSPSGVNSSDSLHSNSQRKASHQDSHITGNMRHGGEGSRFWCSKGGRSEEVGSDMLLLLPHNKLIVINCASLDIWKVIEHKPYNHKANVFSFGITLWELLTGKLPYEHLSPFSSWSAPQGFETQNFDANTSNVSRVDEPLLAPRPFFQTRILSNSGISAPFFPECM 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0043 571 Gene3D - 23 90 IPR036431 GO:0003677
Lele25g0043 571 Pfam ARID/BRIGHT DNA binding domain 34 128 IPR001606 GO:0003677
Lele25g0043 571 MobiDBLite consensus disorder prediction 408 433 - -
Lele25g0043 571 Gene3D Transferase(Phosphotransferase) domain 1 480 537 - -
Lele25g0043 571 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 234 284 IPR009071 -
Lele25g0043 571 Pfam HMG-box domain 231 284 IPR009071 -
Lele25g0043 571 ProSiteProfiles ARID domain profile. 29 122 IPR001606 GO:0003677
Lele25g0043 571 MobiDBLite consensus disorder prediction 408 434 - -
Lele25g0043 571 MobiDBLite consensus disorder prediction 215 234 - -
Lele25g0043 571 SMART bright_3 30 108 IPR001606 GO:0003677
Lele25g0043 571 Pfam Protein tyrosine and serine/threonine kinase 482 517 IPR001245 GO:0004672|GO:0006468
Lele25g0043 571 SUPERFAMILY ARID-like 24 74 IPR036431 GO:0003677
Lele25g0043 571 SUPERFAMILY HMG-box 231 284 IPR036910 -
Lele25g0043 571 CDD HMGB-UBF_HMG-box 234 284 - -
Lele25g0043 571 Gene3D High mobility group box domain 219 287 IPR036910 -
Lele25g0043 571 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 74 - -
Lele25g0043 571 SUPERFAMILY Protein kinase-like (PK-like) 482 518 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0043 Lele-ChrLele25 256355 264948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0043 16 284 ARID Transcription Factor Family AT1G76110 49.828 4.67e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lele25g0043 ARID 1.2e-06 CL0123
TR ARID Lele25g0043 ARID 1.2e-06 CL0123