Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0033 ATGGCATCAAAATTTCTATTCCCAAGTTTTCGTTCCCGCCCCCTCTCGGGGGGGCTGTGGGTGGTTGATATGGGGAAGAAGGATGATCGTAATAATGACGTTTTGGTTCGCTTGGGCCAGAGCTCTAATGATTGCCCCAGTGCTAGTAATGTTTCAGCAGAATTGTCTGATTCAACTGTTCAGCTCAATATCAAGACTTTAGATTCCCACATATACAGTTTTCAAGTGGATAAGAACATGCTAGTTTCAATTTTGAAGGAGAAAATAGCCAATGAAGTTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTGCTGAAGGATAATCATGTTCTTTCTGAGTATCGTATCCTTCACTTATGCCAAATTTACTTAGATATTGAGAATGGGGATACATTGCATTTAGTTCAAAGGCAACTGAACCAGTCACAGGCTCCTGGTACCAGTTCTGGTGAGACACCTGGTACAAGTGGAAACCGAGGAAATGATGCAAGCTCTGGGGCGCATCATAACCGTGTTGGGCAAATTTCACAGAGTGTTGTTCTGGGGACCTTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCCTGATCTTAGTCGGGTCATTGGGGCTGTTTTGAACTCTATTGGAATTGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTTCAGCATCCTTTGTCAATCATCTTAAATCTTTTAAACTCACTGGGTGTATTTCTTATCTGGAGCCAAATCCTTCTACTCAGGGTCCTTCTGGGAATGAAGCTGGGGGAATGCATCTTGAAAATCATAACCAATCAGGAAATCAAACACAGACTGTACAAGCATTTCCTAACCAACCATTCCAATCTTTACCTCAATTAGTTCAGATTCCTCTGGCTGCAGGATCCATAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGAATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTAATGATACTGGGATCATTGCCGTCCTATTTCTGTTGAAAAAGACCATATGCTTAATAGTTAGATTTGCTGAAGCAGGTTATCAAACAAATTCGTCTTCAATGAGTGGAGGAGAGCAAACACATGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGAATTAAGTGCTGTCTTGCATCGTGCTGAACGGCTGCTCAGTGGCCATGCTATTGCTGCACTATCTGTAATGAACTTATCTCTCTCAGAAATATAG 1269 0.4271 MASKFLFPSFRSRPLSGGLWVVDMGKKDDRNNDVLVRLGQSSNDCPSASNVSAELSDSTVQLNIKTLDSHIYSFQVDKNMLVSILKEKIANEVGVPVGQQRLIFRGKVLKDNHVLSEYRILHLCQIYLDIENGDTLHLVQRQLNQSQAPGTSSGETPGTSGNRGNDASSGAHHNRVGQISQSVVLGTFNVGEQGEGIVPDLSRVIGAVLNSIGIGGQSTGGVTNGTQSSSASFVNHLKSFKLTGCISYLEPNPSTQGPSGNEAGGMHLENHNQSGNQTQTVQAFPNQPFQSLPQLVQIPLAAGSITVPSLSAPIPHSLNTLSEFINRMEQTLSQNGNDTGIIAVLFLLKKTICLIVRFAEAGYQTNSSSMSGGEQTHVELPSNPQGLPTVEELSAVLHRAERLLSGHAIAALSVMNLSLSEI 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0033 422 Gene3D - 48 154 - -
Lele25g0033 422 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 47 414 - -
Lele25g0033 422 Pfam Ubiquitin family 62 128 IPR000626 GO:0005515
Lele25g0033 422 SMART ubq_7 60 131 IPR000626 GO:0005515
Lele25g0033 422 ProSiteProfiles Ubiquitin domain profile. 60 128 IPR000626 GO:0005515
Lele25g0033 422 MobiDBLite consensus disorder prediction 144 174 - -
Lele25g0033 422 CDD Ubl_ubiquitin_like 62 139 - -
Lele25g0033 422 SUPERFAMILY Ubiquitin-like 55 143 IPR029071 -
Lele25g0033 422 FunFam Large proline-rich protein BAG6 52 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0033 Lele-ChrLele25 192570 195537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0033 60 141 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.366 4.63e-09 52.8