Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0016 ATGATTGAAAAGAAGGAGGAGTTTCTCATTGTGGCGCCATTTGAGTGCGCATGGCGAAAGGATTTGAAATTCCGAGAAGCCGGTCGGGGTTGCGTGGTTTTCGAAGCTTTTGCGCGCAATGATATCACATTGGTTTTTCGGGAGAATGTGGGGAGCCGGCATTACCATTATAAAAGGGATAGTAGCCCCCACTATACCGTCATTTTGGGCAGCCATAGGAATAGAAGGCTGAGAATTGAGGTTGATGGAAAAACTGTCGTTGATGTGGCTGGGGCTGGACTTTGTTGCTCTTCATCATTCCAGAGTTACTGGATCAGCATCTACGATGGGTTGATTAGCATCGGCAAAGGAAAGTATCCTTTCCAGAATATTGTCTTCCAGTGGCTGGATTCTAATCCTAACTATAATGTTCAGTATATTGGGCTCTGCAGCTGGGATAAACACGTTGGATATAGAAATGTTAATGTGTTGTCGTTAACACACAATCATATGTCCCAGTGGAAGCACGTGAGTTTTGGTGAATATGAAGTGGAGGAGGAGGGTGACGAGGAGTTGGGTAATAACGTTATGGATTATGACAACTGGGGGCCGAAAATTTTTCTGGAGAGTTGGGAATTATCTGACGTTCTATTCATTGTCGGTGCAGAGGAAAGACCTGTACCTGCTCATAAGGCCATTTTATCAGCATGTGGGGATTTTCCTTTAGCCTCATCATTCTCTGTAATTTCGCTGCCCACAGTCACTCACCCGGTTTTTCACGCACTGCTGCAGTACATCTACGCTGGCTGGACTGAGATTCCTCTGGAACAACTAGGTTCCTTGAGGGCTCTAAGTTTACAGTTTGAAGTGACGCCATTGGTTAAACAATGTGAAGAGACCATGGAGCGGTTTAAGCTAAACCAAAAGTTTGTCTCAGGGAAGAATGTGGAGTTATCATTTCCAAGCACTAGGCCCCATTGCTGTTCAACTTTGCCCTCACTTCCTGTCAGTAGTCAGAGACTGAAACAATTGCAATTAACTGGCCAGTACAGTGATGTAAACGTATATATCGAGGGTTATGGGCTTGTTGCCCAAGCGCATAAAATTGTTCTCAGTTTATGGAGCATCCCATTTGCTAAGATGTTCACAAACGGAATGAGTGAAAGTATGTCTTCAAAGATTACTTTAAGGGATGTGCCACCAGAAGCTTTCAAAGCTATGTTTGACTTCTTATACAGTGGGAAACTAAATGACGAAGTTAATATAGATTGTGGTTCTTTGTTGCTGGAGCTGCTTTTATTGGCTGACCAATTTGGAGTGACTGTTCTTCACCAGGAGTGCTGTAAAATGCTTCTAGAATGCCTTTCAGAGGGATGGAGTCTCTTGGGTGAAGGTCATACAACAGACTCATTATGTCCACTCCTTCAAGTGATTTCTTCGATCCCATCATGTAGACATATTAAAGAAACGTGTCTGTGGAAATTCTCCACGAACTTCGACTATTGTACTAGTGCAAGCACCGACTTTGTCTTGTTAGATGATATAACTTTCAGCAATATAATTCAGCATCCAGATTTGACTGTTACATCTGAAGAGAAAGTTCTCAATGCAATCCTAATGTTTGGCATGAAAACTCAAGAACTAGTCTCGTGGGAAGTGGTGGATGAGTTGATAAATTCAAAACTTGAACTTCTTTTTGGTGAGAGGCTTCAGTTAGTTCATGACTTGTTGCCATTTGTGAGATTTCCGCTACTTCCATATTCCTTTCTTAAAAAGTTGCAGAGTAGCAACATTAGCAGACACGTTCTTGTGTTTCAAAATCTTGTTAATGAGGCTCTTAATTTTGTTGAAAGTGGACTGGCAAGCCCTGAAAATAAAGAGAATGTTAGATTCCTTCACAGACGATCTAGTTACAAGGAGCTCCAGTATATATGTGATGGGGACAGCAACGGAGTCTTGTATTTTGCAGGCACATCATATGGAGAACACCAGTGGGTTAATCCTGTTTTGGCAAAGACAATTACCATCACGGCTAGCAGTCCCCACTCAAGATACACTGACCCCAAGGTTTTGGTCTCAAGAACTTACCAGGGAACATCATTTGCGGGGCCTCGATTGGAAAATGGACATAATTGTGCCTGGTGGATGGTTGACCTTGGCAAAGATCATCAGCTCATGTGCTGCTACTACACCTTGCGACAGGACGGTTCCAGGGCCTTCATGAGATTTTGGAATTTCCAGGGGTCTCTGGATGGGAAGAGCTGGACGAATTTGAGGGTACATGAAAACGACAAGACGTTGAGCAAGACTGGTCAATTTGCATCTTGGCCCATAACAGGGTCCAACGCTCTGCTTCCCTTCAAGTATTTCCGGGTTGTTCTAACGGCTCCCACCACTGATGCCACTAATCCGTGGAACTTGTGCATTTGTTACTTGGAACTATATGGCCATTTCCTTTAG 2439 0.4346 MIEKKEEFLIVAPFECAWRKDLKFREAGRGCVVFEAFARNDITLVFRENVGSRHYHYKRDSSPHYTVILGSHRNRRLRIEVDGKTVVDVAGAGLCCSSSFQSYWISIYDGLISIGKGKYPFQNIVFQWLDSNPNYNVQYIGLCSWDKHVGYRNVNVLSLTHNHMSQWKHVSFGEYEVEEEGDEELGNNVMDYDNWGPKIFLESWELSDVLFIVGAEERPVPAHKAILSACGDFPLASSFSVISLPTVTHPVFHALLQYIYAGWTEIPLEQLGSLRALSLQFEVTPLVKQCEETMERFKLNQKFVSGKNVELSFPSTRPHCCSTLPSLPVSSQRLKQLQLTGQYSDVNVYIEGYGLVAQAHKIVLSLWSIPFAKMFTNGMSESMSSKITLRDVPPEAFKAMFDFLYSGKLNDEVNIDCGSLLLELLLLADQFGVTVLHQECCKMLLECLSEGWSLLGEGHTTDSLCPLLQVISSIPSCRHIKETCLWKFSTNFDYCTSASTDFVLLDDITFSNIIQHPDLTVTSEEKVLNAILMFGMKTQELVSWEVVDELINSKLELLFGERLQLVHDLLPFVRFPLLPYSFLKKLQSSNISRHVLVFQNLVNEALNFVESGLASPENKENVRFLHRRSSYKELQYICDGDSNGVLYFAGTSYGEHQWVNPVLAKTITITASSPHSRYTDPKVLVSRTYQGTSFAGPRLENGHNCAWWMVDLGKDHQLMCCYYTLRQDGSRAFMRFWNFQGSLDGKSWTNLRVHENDKTLSKTGQFASWPITGSNALLPFKYFRVVLTAPTTDATNPWNLCICYLELYGHFL 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0016 812 ProSiteProfiles BTB domain profile. 207 268 IPR000210 GO:0005515
Lele25g0016 812 Gene3D Potassium Channel Kv1.1; Chain A 198 311 IPR011333 -
Lele25g0016 812 SUPERFAMILY POZ domain 199 295 IPR011333 -
Lele25g0016 812 SMART BTB_4 207 298 IPR000210 GO:0005515
Lele25g0016 812 SMART BTB_4 344 448 IPR000210 GO:0005515
Lele25g0016 812 ProSiteProfiles BTB domain profile. 344 413 IPR000210 GO:0005515
Lele25g0016 812 SUPERFAMILY POZ domain 331 445 IPR011333 -
Lele25g0016 812 SUPERFAMILY Galactose-binding domain-like 656 811 IPR008979 -
Lele25g0016 812 SMART BACK_2 421 587 IPR011705 -
Lele25g0016 812 Gene3D - 490 609 - -
Lele25g0016 812 Gene3D - 662 810 - -
Lele25g0016 812 Pfam BTB/POZ domain 334 446 IPR000210 GO:0005515
Lele25g0016 812 Pfam BTB/POZ domain 201 295 IPR000210 GO:0005515
Lele25g0016 812 Pfam F5/8 type C domain 668 801 IPR000421 -
Lele25g0016 812 CDD BTB_POZ_ZBTB_KLHL-like 206 281 - -
Lele25g0016 812 Gene3D Potassium Channel Kv1.1; Chain A 326 489 IPR011333 -
Lele25g0016 812 CDD BTB_POZ_ZBTB_KLHL-like 343 414 - -
Lele25g0016 812 PANTHER OS05G0345500 PROTEIN 2 811 - -
Lele25g0016 812 Pfam Farnesoic acid 0-methyl transferase 53 149 IPR022041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0016 Lele-ChrLele25 111911 117330 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele25g0016 F5_F8_type_C 9.7e-12 CL0202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0016 25 111911 117330 Lele27g2068 27 24582563 24596588 hybridization
Lele25g0016 25 111911 117330 Lele28g0029 28 151255 157164 hybridization