Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0011 ATGGCACGGATTAAGTGTGATCAACTGTCCTCCAGAATTCCATTTTGGTATTTGTGTTTAAGCGTGAAAAAAAGTAGGGTTTTCAAATTGCTACTTCTTACAAATTTGGAAAGGCTGCTTGATATGATGGCTTCAAGCTGGGATGGAAGTAATGACCCTGGCAGCCTGTCAGATGAGAGCTATCATTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGTTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTCTGACCCTGAAAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTACGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACAGTACAGGCTTTACATTATATCCAACACATCTGCCAAAGAAGTTGGTCTAATAAGCATATTGTCCGTAGTGCGGGGCTAATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGAATTGTTGTGGAGGAAGACAATGAGAATAAGGGATTGTTGGCTGAAGGGGACACCGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCCAAAGAAAGAGAGGAAGCTGTCTCTCTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGTAGCAAATCGGAAGATATTTTGACGGTGGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCGCCTGAAATCAAACTGGCCATGGCCGGGTACCTTGGTGAGCTGATTTTGAATAATGATGTCAAGGTCCTTGTAGCCAAAACCGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCGCTGAAAGCTCTTAATCAGATATCATCGTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCACCTCTTGTCAATGACCTTTTTGCAGTGGGTCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCTACAATTCTTGCCAATGTTGTGAACTCAGGAGAGGACTTTGATTCTATCCCATTTGGACCGGATCACGAGACTCTGGTTTCAGAGGACATAGTTCATAATCTGCTCCATCTTATAAGCAACACTGGTCCAGCTATTGAATGCAAACTTCTCCAGGTCCTTGTTGGACTTACTGGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCCCCACAGAAAGATTTGCGTGTAGCGTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGCATTGCGTGGTTCAGTCGGACAACTGGGCAGTCTAATTAAAGTCATATCAGGAAATACGGGAATTAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGACCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCTACTCGAGAGTGATTACCATTAGGCAGGGACAGATCAGTGGCAGTCGCTTTGTGACACCATATCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACATATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCAGTGAGCATGGTCTTGCTGCGCTATTTATTGAACTGCTTCAGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCATCAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGATCGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGCAAGTTAGTAGCCCTACTGGACCACACAAATGTGAACGTTGTTGAGGCAGCATTGGTAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATACTTGAAGTGTTACTTGATAAACGAACAGAAAATCTGATGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAAAATGTTGGTACAGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCAGGAATTTTTCCAAGCATGGGATAG 2568 0.4322 MARIKCDQLSSRIPFWYLCLSVKKSRVFKLLLLTNLERLLDMMASSWDGSNDPGSLSDESYHFERMHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTVQALHYIQHICQRSWSNKHIVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKGLLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPEIKLAMAGYLGELILNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSPLVNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPDHETLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADALRGSVGQLGSLIKVISGNTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVYSRVITIRQGQISGSRFVTPYLEGLVKILARLTYVLADEPDAISFCSEHGLAALFIELLQANGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCASIFPCLSKQPVITGSCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALVALSTLLDDGVDIEQGVMVLFEAEGIKPILEVLLDKRTENLMRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPSMG 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0011 855 SMART Ubox_2 74 142 IPR003613 GO:0004842|GO:0016567
Lele25g0011 855 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 58 851 - -
Lele25g0011 855 SUPERFAMILY ARM repeat 496 843 IPR016024 -
Lele25g0011 855 SUPERFAMILY RING/U-box 64 152 - -
Lele25g0011 855 SUPERFAMILY ARM repeat 164 486 IPR016024 -
Lele25g0011 855 Pfam U-box domain 73 147 IPR003613 GO:0004842|GO:0016567
Lele25g0011 855 Coils Coil 295 318 - -
Lele25g0011 855 Gene3D - 614 845 IPR011989 -
Lele25g0011 855 CDD RING-Ubox_PUB 75 120 IPR045210 -
Lele25g0011 855 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 157 IPR013083 -
Lele25g0011 855 SMART arm_5 714 755 IPR000225 GO:0005515
Lele25g0011 855 SMART arm_5 223 263 IPR000225 GO:0005515
Lele25g0011 855 SMART arm_5 181 221 IPR000225 GO:0005515
Lele25g0011 855 SMART arm_5 759 801 IPR000225 GO:0005515
Lele25g0011 855 SMART arm_5 389 434 IPR000225 GO:0005515
Lele25g0011 855 SMART arm_5 308 348 IPR000225 GO:0005515
Lele25g0011 855 ProSiteProfiles U-box domain profile. 70 149 IPR003613 GO:0004842|GO:0016567
Lele25g0011 855 Gene3D - 160 358 IPR011989 -
Lele25g0011 855 Gene3D - 359 528 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0011 Lele-ChrLele25 53041 60774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g0011 44 855 U-box Gene Family AT1G76390 64.251 0.0 1019