Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1921 ATGACCGAACCAGAAGACAAGCGTCATGCCTCCCTCGAGGAAAGGAAGAAGAGGAAGAGGAAAAGGAATAGACCGCGGAAATCTGTAGCTGAGGGGCGGTTGGACCCTCAAGAGTCAAACCGGCATGGGGAGGACGAAGGCGAAGAAGCTCGAGAGAATAGTGGGGATAAGGAGTCTGCTGAGTTGCGTAAGAAAAAGAAGGATAAAAAGGTGAAGCGCGGAGAAGGAATGAGTGAAGGGGAAAAGGGTGGCGATGAGAATGAGGAGGAGGAGGAGGTCGAACCAAGGAAGTTAAAGAATGTTGGGTCTGGAATTATGAGCACTGTGTCGTTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAGGATATGGGATTTGAGCATACGACTCAGATTCAAGCTAGAGCAATCCCGCCGCTCTTGATTGGGAAAGATGTTCTTGGTGCTGCGAGGACGGGTTCTGGAAAAACTCTTGCTTTTCTAATACCAGCTGTGGAGCTGTTGTACCATGCTCAATTCACTCCACGAAATGGAACCGGTGTCGTTGTCATATGCCCTACTAGGGAGCTTGGAATACAGACACATGCTGTAGCGAAAGAACTTCTCAAGTATCACTCCCAGACTCTTGCATTGGTTATTGGAGGTTCAGCTAGAAAAGGAGAAGCTGAACGAATTGTTAAAGGGGTGAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATATATAAGAATTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAAATCTTACCAAAGGTTGAGGATCTTGCCCGCATTTCATTTCAGACAACTCCTATCTATGTTGATGTGGATGATGGGAGGACCCAGGTTACAAATGAAGGATTGCAGCAGGGCTATGTTCTTGTTCCCTACCTTCTCAATTACATACAGATTGATTGCTTTAATATACATGGAAAACAAAAGCAGCAGACACGCACTACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGGCTCGATATACCTGATGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCACAGGGTTGGTCGAACAGCTCGTGGGGAAGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCAGTATCTAAAGGCAGCGAAGGTTCCTGTAAAAGAATATTTGTTTGATGAAAAGAAGCTGTCAAATGTACAATCTCACCTGGAAAAGTTGGTGGGTAACAACTATTATTTGAACAAGGCAGCTAAAGATGCTTACAGATGTATTGCTGCGTTTATTAAACATATCATAATTGATTTAGGTCTAGTAAGATACATGAGAAAGTGGACTATGGCTGTGGCAGCTTCATTCTGTTTTTCAAATCCACCAAAGGTGAGTCTAGGCATAGACAGCAGTGCTTCAAAGCATAGGAAGAAAATGCGTAAGAGATGTGAATTACATGGAAATAGGAATCCTGAGAAAGCATCAAGCCGGAAGAAAGGGCCTTGA 1626 0.4373 MTEPEDKRHASLEERKKRKRKRNRPRKSVAEGRLDPQESNRHGEDEGEEARENSGDKESAELRKKKKDKKVKRGEGMSEGEKGGDENEEEEEVEPRKLKNVGSGIMSTVSFDSLGLSEPTFKAIKDMGFEHTTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYHAQFTPRNGTGVVVICPTRELGIQTHAVAKELLKYHSQTLALVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKVEDLARISFQTTPIYVDVDDGRTQVTNEGLQQGYVLVPYLLNYIQIDCFNIHGKQKQQTRTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLQYLKAAKVPVKEYLFDEKKLSNVQSHLEKLVGNNYYLNKAAKDAYRCIAAFIKHIIIDLGLVRYMRKWTMAVAASFCFSNPPKVSLGIDSSASKHRKKMRKRCELHGNRNPEKASSRKKGP 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1921 541 MobiDBLite consensus disorder prediction 1 99 - -
Lele24g1921 541 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 261 269 IPR000629 -
Lele24g1921 541 Pfam Helicase conserved C-terminal domain 323 401 IPR001650 -
Lele24g1921 541 PANTHER RNA HELICASE 61 324 - -
Lele24g1921 541 Gene3D - 308 450 IPR027417 -
Lele24g1921 541 Gene3D - 47 305 IPR027417 -
Lele24g1921 541 MobiDBLite consensus disorder prediction 525 541 - -
Lele24g1921 541 SMART helicmild6 320 402 IPR001650 -
Lele24g1921 541 MobiDBLite consensus disorder prediction 13 27 - -
Lele24g1921 541 CDD DEADc_DDX18 120 303 IPR044773 GO:0003724|GO:0005524
Lele24g1921 541 CDD SF2_C_DEAD 326 412 - -
Lele24g1921 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 421 IPR027417 -
Lele24g1921 541 MobiDBLite consensus disorder prediction 28 65 - -
Lele24g1921 541 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Lele24g1921 541 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 317 IPR014001 -
Lele24g1921 541 SMART ultradead3 128 319 IPR014001 -
Lele24g1921 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 486 IPR027417 -
Lele24g1921 541 Pfam DEAD/DEAH box helicase 133 289 IPR011545 GO:0003676|GO:0005524
Lele24g1921 541 MobiDBLite consensus disorder prediction 509 541 - -
Lele24g1921 541 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 451 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1921 Lele-ChrLele24 23868123 23873394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1921 110 420 Eukaryotic Initiation Factors Gene Family AT3G13920 28.333 1.73e-36 139