Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1919 ATGGTGATCCCCTCATGCTGGGCTGGGTCAGGGGCAAATTGTGTAGCTGAAAGTTTGAGTTTAGCCCGTGAAACGATGGACCCAATGGATATCATTGGGAAATCGAAGGAAGATGCTTCGCTTCCTAAAGCAACTATGACAAAAATTATTAAAGAAATGTTACCCCCGGATGTACGTGTTGCAAGAGATGCTCAAGATCTGTTGATTGAGTGTTGTGTAGACTTTATAAATCTTGTGTCATCTGAGTCCAATGAAGTCTGTAGCAGAGAGGAGAGAAGGACAATTGCACCTGAGCATGTATTGAAGGCTTTAGAGGTTCTTGGATTTGGTGAGTATATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGATTGAGACCATGCAGGACTCTCTAAAAGGAGGGAAATGGAGCAATGGAGCAGAAATGACGGAGGAGGAAGCTTTAGCGGAGCAGCAAAGGATGTTTGCGGAGGCACGTGCCAGAATGAATGGTGAGGCCATTGCTTCCAAGCAGCCAGATACTGACCAGAGTTTGGAGAGCTGA 546 0.4524 MVIPSCWAGSGANCVAESLSLARETMDPMDIIGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVDFINLVSSESNEVCSREERRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKIETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGEAIASKQPDTDQSLES 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1919 181 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 104 IPR003958 -
Lele24g1919 181 SUPERFAMILY Histone-fold 37 168 IPR009072 GO:0046982
Lele24g1919 181 FunFam Negative cofactor 2 beta 31 168 - -
Lele24g1919 181 Gene3D Histone, subunit A 29 171 IPR009072 GO:0046982
Lele24g1919 181 PANTHER PROTEIN DR1 HOMOLOG 26 180 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1919 Lele-ChrLele24 23850779 23854301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1919 26 177 CCAAT-DR1 Transcription Factor Family AT5G23090 81.818 7.17e-92 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele24g1919 CBFD_NFYB_HMF 1.8e-21 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1919 24 23850779 23854301 Lele24g1919 24 23850779 23854301 ECH
Lele21g2002 21 26907420 26910522 Lele24g1919 24 23850779 23854301 hybridization
Lele22g1968 22 24282712 24285443 Lele24g1919 24 23850779 23854301 hybridization