Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1916 ATGGAAAACCTAGAGATCTCATCAGAATGTCCACTTTCTTCTCAAGGCTCAAACAAAAGCCCATCTTTAATGCCTCGTGAATCAGTTAATAAGCCCTATGTGAGCACAGAGAGGAGGATAACGAAGGTTCCAAGTAGAACAGTCAGGAGGGTAAATCAGATAAAGTACCTCGGGGTGAGACAACGGCCTTCAGGAAGGTGGGTCGCTGAGATCAAGGACTCCTCACAGAAGCTGAGGCTTTGGCTGGGAACTTTTGACAGAGCAGAAGATGCTGCTATGGCTTATGATTGTGCTGCCAGGCTTCTAAGAGGAAGAAATGCCAAGACAAACTTCCAGTGCCCTTCAGGGATGATCTCCAACTCACACGAGGCTATTTGCAGCTTTTTGCATAAAAATCCGAGGGCCTACCAGATTCTGAAGCATGCAATCATGAAAAACCATCATGCAGTTCTTTCCTCCACGGCCATGTCTTGGAAGAACCAGATCAGTAGTATGACGAGAGACGGATTCGACGCGCTTGTTGAAGAAACCATAGTTTGCTGTTCCACTAGTTCTGAAGAAGGTTCTTCATCTTCTGGGTACTGTGGGGTGTCATTTGGGAGTTCTAAGGTTTATTCTTCTGTTGTTGTGGCTCCTTCTTTCAGTGCCTCATTTTGTGAGAAAGATGATGGTCAGGAAGAAACCCCTTAA 690 0.458 MENLEISSECPLSSQGSNKSPSLMPRESVNKPYVSTERRITKVPSRTVRRVNQIKYLGVRQRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAAMAYDCAARLLRGRNAKTNFQCPSGMISNSHEAICSFLHKNPRAYQILKHAIMKNHHAVLSSTAMSWKNQISSMTRDGFDALVEETIVCCSTSSEEGSSSSGYCGVSFGSSKVYSSVVVAPSFSASFCEKDDGQEETP 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1916 229 FunFam ethylene-responsive transcription factor RAP2-11 54 113 - -
Lele24g1916 229 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677
Lele24g1916 229 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 Pfam AP2 domain 55 104 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 MobiDBLite consensus disorder prediction 1 38 - -
Lele24g1916 229 MobiDBLite consensus disorder prediction 1 25 - -
Lele24g1916 229 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 CDD AP2 55 112 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Lele24g1916 229 Gene3D AP2/ERF domain 54 113 IPR036955 GO:0003700|GO:0006355
Lele24g1916 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 51 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1916 Lele-ChrLele24 23828644 23829333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1916 52 111 AP2-EREBP Transcription Factor Family AT5G19790 70.000 3.90e-25 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele24g1916 AP2 3.9e-11 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1916 24 23828644 23829333 Lele24g1916 24 23828644 23829333 ECH
Lele21g1999 21 26887509 26888159 Lele24g1916 24 23828644 23829333 hybridization
Lele22g1966 22 24265106 24265801 Lele24g1916 24 23828644 23829333 hybridization