Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1887 ATGGGGCGGGGAAGAGTGGAGCTGAAGAGAATAGAGAACAAGATCAACAGGCAGGTGACTTTCAGCAAAAGAAGGTCCGGCCTAGTCAAGAAAGCCAAAGAGATCTCTGTGCTCTGCGATGCCGAAGTCGCTCTCATAGTCTTCTCCACCAAAGGCAAGCTCTTTCACTACTCCAGCGACCCCTGTGTGGAAAGAATTTTGGAACGATACGAGAGTTATTCCTACGCAGAGAGGCAGCTTGCTGCAAATGATCCGGAATCCAATTGTCGGGAAAACTGGACTTTACAGCACGCGAAGTTGAAGGCAAGGATAGAGGTCCTACAAAGAAATCAAAAGCATTTTATGGGAGAAGATCTGGAGGGCTTAAGTCTGAAAGAGCTTCAGAATTTGGAGCATCAGCTGGAGTCGGCTCTGAAACACATAAGATCACGAACGAACCGGCTCATGAACGAATCTATTTCTGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACAAAACAACGTACTCACTAAGAAGGAAAGAGAGAAGGCAGTGGAGCAGCAGAAGAATCAAGGGTTGGATGACTCCTCTGTTCAGTTAACACAACACCCGTTGCTGCCTTTGAATATCATTGGAGGATCAAGAGGTGACGGTGTAGATTATGGAGCAAGTATGTATGAGTCTCGACCCAATAACGCACTGCTTCCTTGGATGCTTCGCCCTCTCTGA 711 0.4712 MGRGRVELKRIENKINRQVTFSKRRSGLVKKAKEISVLCDAEVALIVFSTKGKLFHYSSDPCVERILERYESYSYAERQLAANDPESNCRENWTLQHAKLKARIEVLQRNQKHFMGEDLEGLSLKELQNLEHQLESALKHIRSRTNRLMNESISELQKKDKALQEQNNVLTKKEREKAVEQQKNQGLDDSSVQLTQHPLLPLNIIGGSRGDGVDYGASMYESRPNNALLPWMLRPL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1887 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lele24g1887 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 Pfam K-box region 87 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele24g1887 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 Coils Coil 90 110 - -
Lele24g1887 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
Lele24g1887 236 Coils Coil 124 183 - -
Lele24g1887 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lele24g1887 236 ProSiteProfiles K-box domain profile. 90 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele24g1887 236 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Lele24g1887 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele24g1887 236 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lele24g1887 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1887 Lele-ChrLele24 23660118 23663392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1887 1 200 MADS-box Gene Family AT1G26310 64.593 1.66e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele24g1887 K-box 2e-26 No_clan