Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1885 ATGGCGACGTCAGTCATTGGATCTGTTGCCTCCGCTTTCTTACTCGCATTTCTCTTCCCTTGCTTCATATTCATCTCCACAGAAGCCTATGATCCCCTCGATCCAAATGGAAACATAACAATCAAATGGGATGTGATAAGCTGGACGCCAGATGGCTACGTTGCTGTGGTTACAATGTACAACTTTCAACAGTATCGGCACATTCAGGCCCCTGGGTGGACATTGGGATGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAGGCCAAACCACCGAGCAAGGTGACTGCACAAAATTCAAAGGGAATCCCCCCCATTGCTGCAAGAGGGATCCAACGGTGGTGGATCTACTTCCTGGAACTCCGTACAATCAGCAGATCGCAAATTGCTGCAAAGGGGGAGTGTTGAATTCATGGGCTCAGGACCCAGCCACAGCAATAAGTTCATTTCAGGTCAGTGTTGGCCTTGCTGGAACAACCAACAAAACTGTCAAGCTGCCTAGAAATTTCACCCTTAAAGCGCCGGGGCCTGGATACACTTGCGGTCCTGCAAAGATTGTGAAACCAACCAAGTTTGTCACCAATGACAAAAGGAGAACCACTCAAGCATTGATGACCTGGAATGTTACCTGCACATATTCTCAATTCCTTGCTCAAAAGACCCCAAGTTGCTGTGTTTCCCTTTCATCCTTCTATAATGATACTATAGTGAACTGCCCAACCTGCACATGTGGCTGTCGAAACAAAACAGAACCCGGAAGCTGTGTGGATCCAAATTCCCCACATTTGGCCTCAGTTGTAGCGCCTTCAGGCAAAGCTAGTAATACACCTCTCGTCCAGTGCACCAGCCATATGTGTCCAATTCGAGTGCATTGGCATGTGAAGGTCAATTATAAAGAGTACTGGAGAGTGAAGATCACAGTCACAAATTTCAATTATAGGATGAACTACACCCAATGGAATCTTGTTGTGCAGCACCCCAATTTTGACAATCTGACCCAGCTTTTCAGCTTTAATTACAAGCCATTAACGCCTTATGAGGGTTTGAATGATACTGGCATGCTATGGGGATTACAGTTCTACAACGATTTTCTGGCATCAGCTGGAGAATTTGGGAATGTACAGTCTGAGCTCTTATTTAGAAAGGATGCATCAACCTTCACATTTGACAAGGGCTGGGCTTTTCCCAGGAGAATTTATTTCAATGGAGATAACTGCGTTATGCCTCCTCCTGATGCCTACCCATGGCTGCCAAATGCAACTACAAAACTAAATTTATCCCTCCTAAGTACAGCCATATCTGCCTTTGTTTCTTTGATAATTTTTTTGGCTAATTTATAG 1347 0.4506 MATSVIGSVASAFLLAFLFPCFIFISTEAYDPLDPNGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGGQTTEQGDCTKFKGNPPHCCKRDPTVVDLLPGTPYNQQIANCCKGGVLNSWAQDPATAISSFQVSVGLAGTTNKTVKLPRNFTLKAPGPGYTCGPAKIVKPTKFVTNDKRRTTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCTCGCRNKTEPGSCVDPNSPHLASVVAPSGKASNTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNYTQWNLVVQHPNFDNLTQLFSFNYKPLTPYEGLNDTGMLWGLQFYNDFLASAGEFGNVQSELLFRKDASTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNATTKLNLSLLSTAISAFVSLIIFLANL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1885 448 PIRSF COBRA 2 448 IPR006918 GO:0010215|GO:0016020
Lele24g1885 448 PANTHER PROTEIN COBRA 21 434 IPR006918 GO:0010215|GO:0016020
Lele24g1885 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1885 Lele-ChrLele24 23626888 23629676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1885 27 445 COBRA Gene Family AT3G02210 77.143 0.0 711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele19g0713 19 4137402 4139414 Lele24g1885 24 23626888 23629676 CCT
Lele20g0744 20 14442768 14446879 Lele24g1885 24 23626888 23629676 CCT
Lele24g1885 24 23626888 23629676 Lele24g1885 24 23626888 23629676 ECH
Lele21g1974 21 26718368 26724709 Lele24g1885 24 23626888 23629676 hybridization
Lele22g1937 22 24067879 24070693 Lele24g1885 24 23626888 23629676 hybridization