Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1878 ATGATGACTGGAAATTCAAGAAAAGGTTATCAAGGGAAGCAAGAGGAAGATAGTAGTAGTGCTCATTATCATCATCATCAACAACAACAACACATGATTAGTAACAGTATTGGGAGGTTGTACAGCAAGGTAGGGCCTTCCTCTTCCTCTTCAAGACAATGGTCTGGTCTGAGAAACCCAAGAATCGTGCGAGTGTCAAGGTCTTTTGGAGGCAAAGATAGGCACAGCAAAGTCTGCACCATTAGAGGGCTTAGAGACAGAAGAATCAGGCTTTCTGTGCCCACTGCGATTCAGCTATATGAGCTTCAAGATCGGCTTGGACTGAACCAACCCAGCAAGGTCATTGATTGGCTCATTGAAGCCACAAAACAAGACATTGATAAGCTCCCACCTCTTCCAATCCCTCTTGGTTTTCCCCAATTTCATCCCCAACACCACCAAACCCTACTTAATCCTGATCATGAATCAAGTTCTTCCTCTCATCATAATCAGTTTGGAGCTTTCTTTGATGTTAATAAGAATAATAGCACGGCTAGTTTCATGGATACAGTGTCGAGGCTAAAAGGAAAAGAGTTAGATGAAAGAGGGAAGTGGGTGATGAAAACAAACAATGAAGAAGACGGAATTGGTGGTTCTGATTCTGCTCAGACTCTTTTCCCATCTTGGAATGCTAATTCTTCTCACTCTTGTTTACCTATGAATCCCTTCCATTCTGAGCCTTCAAATTTTCTATCTTTATTCGGAAGCCATGGTGTGTTCCCTAATAATAGTAGTAATAATAATAACAATCACCAGGTAGATCCTGCAGGCCATACTAGTTTGCAGTTTCCATCTTCCTCGTCATCAGCTAGTGTTTCCCAAGTGTTGTTCTGTCCAAGTAATACATCTGCAACAACAACACCACCACCAACACTTTTTGGTACTTATTATGCTCCATATTCCTCAGTGTCACTGGAAACAGACCCAAGAATGCAACAATTGAACCATATTCAGTTGATGAGTTCATCCAATTCTCATCCTCATCATCCTATCCTTCTTCCATCTCTGAAACCCCTAATTCCAACACAGTCTTTTAGTTCCAGGATTCTTGATTCAAATGATAAGGATGATAATACTCAGTCTTGA 1125 0.4116 MMTGNSRKGYQGKQEEDSSSAHYHHHQQQQHMISNSIGRLYSKVGPSSSSSRQWSGLRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYELQDRLGLNQPSKVIDWLIEATKQDIDKLPPLPIPLGFPQFHPQHHQTLLNPDHESSSSSHHNQFGAFFDVNKNNSTASFMDTVSRLKGKELDERGKWVMKTNNEEDGIGGSDSAQTLFPSWNANSSHSCLPMNPFHSEPSNFLSLFGSHGVFPNNSSNNNNNHQVDPAGHTSLQFPSSSSSASVSQVLFCPSNTSATTTPPPTLFGTYYAPYSSVSLETDPRMQQLNHIQLMSSSNSHPHHPILLPSLKPLIPTQSFSSRILDSNDKDDNTQS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1878 374 Pfam TCP family transcription factor 71 183 IPR017887 -
Lele24g1878 374 MobiDBLite consensus disorder prediction 1 32 - -
Lele24g1878 374 MobiDBLite consensus disorder prediction 255 278 - -
Lele24g1878 374 ProSiteProfiles TCP domain profile. 71 129 IPR017887 -
Lele24g1878 374 MobiDBLite consensus disorder prediction 10 24 - -
Lele24g1878 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 321 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1878 Lele-ChrLele24 23560481 23561605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1878 12 143 TCP Transcription Factor Family AT5G60970 66.165 4.30e-48 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lele24g1878 TCP 6.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1967 21 26668820 26669938 Lele24g1878 24 23560481 23561605 hybridization
Lele22g1930 22 24000282 24001415 Lele24g1878 24 23560481 23561605 hybridization