Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1852 ATGATGCTTAGCAGGGGATCCCCAGAAATGGGGTCCCAGAAGAAACCAAAGCAATCAGAGCTTTTGAGCAAGACGAAGAAGCTGGATTTTCAGTCTGCAATGGAGGATTCTGAGGAAGATGATGATAAAGAGCAAGGGAAGAGGAATTTCAAGTTGCTAGGTTCGGAAATGAACTCAAATCCCTCCAAGATTTGTCACAGGAGAGGCATTTTCGAGTGTACTACTTGCAACAAGATCTTCCATTCTTACCAAGCTCTTGGTGGCCATAGAGCCAGCCATAAGAAGATCGCCAGAGACTGCTTTGTTCCAATAATAGATGAGACCAGTGAGAACTCTGTAAAGCCTGATTTGTCTCACCATGAACCAATTTCTGGTTCGGATGTTCATGAAGATGATGCAGACTTTGACAAGAGCAAGGATCATGATAAGAGATCCCATTTAGCTGAGGTGTCTGGTTTGATTGAGAAACCAGTTGAGAAAATTAGGGAGTTGATTGATCTTAATGTTCCAGCAGAGGAAGAAGACAGCAACAATAATAGCAATTCTGAGTGTTACAGATCAACATCACCGTGGATCCTGTCTGATATGTCATCTTCTTCTTCTTCAAGCTACTACGGTATCCAGTTCTTAAATTCGGTCGTTGAAACAGCTCGGCTTGATCCCCACTTCATTTACTTTTCCCGGTCTTTATATCAACTTGTGAAAAGTCTGTTTATATTCCACGTTTCGTGGCTTTATCCAGGAACAATTTGCTTTCTGTTCAGGTTATATAGGATTGTTGTCTCTTATTTCCTTATCAGTTTACCTGCAATTTGCTGGGTCGGCTTGAAGATAGATAATGTCAGGACATCTTCAGATCCTTCCCTAGTTTTACAAGGAGGAAAAACCAATCCTTTTGATGATGATGGAGGCCATAGGAACTCTTCTTCATCTTATGCCATTCAATCAGCAAACCAAAACAAGTATAGGAACGATTTTCGTGATTCAGGAGGAATAGATAATCAATCAGTGCAAAATTATGCTGTCTACAAGGCTGAAGAGACTACAAAATCAGTCAATAACTGTTTGAAGATAGCAGAGGAGATAAGAGAGGATGCTACCAAGACTTTAGTCACTCTACACCAACAGGGTGAGCAAATTACCTGGTCTCACAATGTTGCAGTTGACATCGACCAAGATCTTAGTCGGGGAGGAAGGCTTTTAGGAAGTCTTGGTGGCATTTTTTTCGAAACTTGGAAACCAAAGAAGACACGAGCAATTACAGGCCCTGTTATTGTTGGAGATGATCAGGTCCGAAGAAAGGGAAGCCACTTGGAACAGAGAGAGAAATTGGGATTGACTTCTGCACCCAGAGGGAAGTCAAACTCTCTAACACCACCTCCTGAGCCAACCAAAGCTCTTGAAAAAGTTGAGATTGAAAAGGGGAAACAAGAGAACGCATTGTCAGATTTAAATGATCTCTTGGGAGAGCTGAAAGATATGGCTATTGACATGGGATCTGAAATTGAGAGGATGGAACTGATTGTGTAG 1530 0.4176 MMLSRGSPEMGSQKKPKQSELLSKTKKLDFQSAMEDSEEDDDKEQGKRNFKLLGSEMNSNPSKICHRRGIFECTTCNKIFHSYQALGGHRASHKKIARDCFVPIIDETSENSVKPDLSHHEPISGSDVHEDDADFDKSKDHDKRSHLAEVSGLIEKPVEKIRELIDLNVPAEEEDSNNNSNSECYRSTSPWILSDMSSSSSSSYYGIQFLNSVVETARLDPHFIYFSRSLYQLVKSLFIFHVSWLYPGTICFLFRLYRIVVSYFLISLPAICWVGLKIDNVRTSSDPSLVLQGGKTNPFDDDGGHRNSSSSYAIQSANQNKYRNDFRDSGGIDNQSVQNYAVYKAEETTKSVNNCLKIAEEIREDATKTLVTLHQQGEQITWSHNVAVDIDQDLSRGGRLLGSLGGIFFETWKPKKTRAITGPVIVGDDQVRRKGSHLEQREKLGLTSAPRGKSNSLTPPPEPTKALEKVEIEKGKQENALSDLNDLLGELKDMAIDMGSEIERMELIV 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1852 509 Gene3D - 332 405 - -
Lele24g1852 509 FunFam SNAP25 homologous protein SNAP33 331 405 - -
Lele24g1852 509 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele24g1852 509 Gene3D - 453 506 - -
Lele24g1852 509 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele24g1852 509 MobiDBLite consensus disorder prediction 285 310 - -
Lele24g1852 509 SUPERFAMILY SNARE fusion complex 335 402 - -
Lele24g1852 509 MobiDBLite consensus disorder prediction 432 464 - -
Lele24g1852 509 Pfam C2H2-type zinc finger 71 95 - -
Lele24g1852 509 MobiDBLite consensus disorder prediction 1 46 - -
Lele24g1852 509 MobiDBLite consensus disorder prediction 432 446 - -
Lele24g1852 509 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 297 504 - -
Lele24g1852 509 MobiDBLite consensus disorder prediction 112 146 - -
Lele24g1852 509 CDD SNARE_SNAP25N_23N_29N_SEC9N 339 393 IPR044766 GO:0005484|GO:0031201
Lele24g1852 509 Coils Coil 467 487 - -
Lele24g1852 509 MobiDBLite consensus disorder prediction 19 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1852 Lele-ChrLele24 23388017 23393191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1852 67 175 C2H2 Transcription Factor Family AT1G02030 41.818 1.49e-10 60.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1852 24 23388017 23393191 Lele24g1852 24 23388017 23393191 ECH
Lele21g1935 21 26487214 26489097 Lele24g1852 24 23388017 23393191 hybridization
Lele22g1902 22 23795395 23797796 Lele24g1852 24 23388017 23393191 hybridization