Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1829 ATGGAAGCTGAAGAGATCGAAAGAGTTGGAAGGTTCCATTTTGTATCGAAGTTGATCTTATCCGCCATTTCCGGGGCTCTCACGGGATGTTTTGCCATTGCTGGAGCCATTACAGGAGCTATAGCTGGTGCATTAGCGAGTAGGGCTTCTGAGAGCGGTTTTCTCCGTGGAGCTTCATTGGGGGCCATTGCTGGGGCTATAATATCTGTTGAGGTGTTAGAAGCTTCCCGTGCCTACTGGTGTTTAGAGCAAACTGGCTCGAGGAGCTCATCATCCATGGCAGATTTCATAGAGCAACTTGTTCGCGGGAGGCTTGTAGAGGAACAATTTTCACCAGCTATACTGACTGCTTACAGTTGGCAGGTTGGGGTTGCTAATACAGGCTATGATGAGATTCCTGATGTTCATAGCTTATTTTCACCTAGAGGATTGTCTGGGGATTCTTTGAAGAAGTTACCTCACCATGTTATCTTAAAGGACATGAAGACGGACAATCTCTGCTGCACAATATGTTTGCAGGATTTTGAAGTTGGAGAAATTGCAAGGAGCTTACCTCTATGTCAACATACGTTTCACTTGAACTGTGTAGACCGATGGCTTGTCAAGAATGATTCATGTCCTGTCTGCAGGCAATATGTATAG 642 0.4548 MEAEEIERVGRFHFVSKLILSAISGALTGCFAIAGAITGAIAGALASRASESGFLRGASLGAIAGAIISVEVLEASRAYWCLEQTGSRSSSSMADFIEQLVRGRLVEEQFSPAILTAYSWQVGVANTGYDEIPDVHSLFSPRGLSGDSLKKLPHHVILKDMKTDNLCCTICLQDFEVGEIARSLPLCQHTFHLNCVDRWLVKNDSCPVCRQYV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1829 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 213 IPR013083 -
Lele24g1829 213 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Lele24g1829 213 SMART ring_2 168 209 IPR001841 -
Lele24g1829 213 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 4 212 IPR044523 -
Lele24g1829 213 Pfam Ring finger domain 168 210 IPR001841 -
Lele24g1829 213 SUPERFAMILY RING/U-box 149 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1829 Lele-ChrLele24 23272770 23274710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1829 1 213 C3H Transcription Factor Family AT1G74410 57.009 3.47e-77 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1829 24 23272770 23274710 Lele24g1829 24 23272770 23274710 ECH
Lele21g1915 21 26357430 26361123 Lele24g1829 24 23272770 23274710 hybridization
Lele22g1882 22 23678670 23680924 Lele24g1829 24 23272770 23274710 hybridization