Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1801 ATGGTTCACATTTCATTCTACCATGGGAAAACCTTCAAGAAGCCCTGTCATCCATATGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTTGTGGGAGAGTATGGACTTCGCTGCAAAAGGGAGCTTTGGAGGGTTCAGTACGCACTGAGTCGTATCCGTAATAATGCAAGGGAACTTTTGACCCTTGATGAGAAGAACCCACGTCGGATCTTTGAGGGTGAAGCTCTTCTACGTCGTATGTTTCAATATGGGCTCTTAGATGAGAGTCAAAACAAGCTCGATTACGTCTTGGCTTTGACTGTGGAGAACTTCCTCGAGTGTCATCTTCAAATCTGGGATGGCCAAGAAGCTTTAGGTGCCTGGGTGGTGAACATCACATCATTCATGGTTCGAGTTGATTCCCATAAGAACATTGACTTTTCACTTACAAGTCCATTTGGGGGCAATCGTCCTGGAAGAGTGAAGAGAATGAACTAA 477 0.4528 MVHISFYHGKTFKKPCHPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARELLTLDEKNPRRIFEGEALLRRMFQYGLLDESQNKLDYVLALTVENFLECHLQIWDGQEALGAWVVNITSFMVRVDSHKNIDFSLTSPFGGNRPGRVKRMN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1801 158 SUPERFAMILY Alpha-L RNA-binding motif 10 112 - -
Lele24g1801 158 SMART Ribosomal_S4_2 6 106 IPR001912 GO:0019843
Lele24g1801 158 PANTHER 30S 40S RIBOSOMAL PROTEIN 122 156 IPR022801 GO:0003735|GO:0015935|GO:0019843
Lele24g1801 158 Pfam Ribosomal protein S4/S9 N-terminal domain 8 106 IPR001912 GO:0019843
Lele24g1801 158 TIGRFAM uS4_arch: ribosomal protein uS4 10 111 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1801 Lele-ChrLele24 23089843 23091156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1801 1 158 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 71.910 2.78e-84 244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0133 23 854990 856367 Lele24g1801 24 23089843 23091156 ECH
Lele24g1801 24 23089843 23091156 Lele24g1801 24 23089843 23091156 ECH
Lele21g1882 21 26171185 26172564 Lele24g1801 24 23089843 23091156 hybridization
Lele22g1850 22 23475248 23476642 Lele24g1801 24 23089843 23091156 hybridization