LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele24g1791	ATGAGTATCGAAAAGAGGGAATTGGGGGTTGAGTTGGCAATGAGTAGAAGGATTCGAGGAAGATGGGCCTCCTCTGGTGTCCTTGGGGTTTTAGTAGACTTATGGGCTAGTTTTGATTTAGTACGACATTCTGGTTCCGCAGCGAGCATACAAACCACAGAAATGACTAAAGAAGAGCTTCAGAACCAAAATGATGACATGCTTATCGACGGATATGAACCTGAAACGCCTGGGCAAAAGCAGGAAAGTCATGTTCCTAGCGAGTTCAATCCGGATCATCTTAAAGTATTTTACGGAAAGCTATTTCCTTATGCTGATTTTTTTAAATGGATGTCTTACGGCAATGATGGGAAGCATCCTGGTTGTGACCCCTCTTACATCAGCCGGAGGGAATTTTCGTTTTCGCTTGACAACGATATATTTCTACGGTTCCAATCTTTCCACAGTGCTGTGGAGCTTGAAAACTCCATCAAAGAGAAATGCCCATTTAAGATTGATATTGGACCTGTGTATAGCGTGGAGCCCACAAAAAGGCATGCCTATACTCGGACTGGTGATAATGTCTTCGCTCCAGTTGAGAGAGAGCTAATTTTTGATATTGATATGACAGATTACGATGATGTCAGATACTGCTGCAATGGTGCTGATGTTTGCTTGAATTGCTGGCCATTGATGACTATATCTATTAAAGTGATTGATACCGCCTTAAGAGATGATTTTGGCTTTAAGCACATTCTATGGGTTTATAGTGGCCGCCGTGGTGTTCACTGTTGGGTCTGTGATGGGAAGGCAAGAAGGTTGACTAACGAGCAGAGAGCAGCTATTGCTGACTATTTTCGTGTCTACAAGGGAAATGAGAATAGTCATAAGAAGGTTTCATTGTCGGGTCATGCTCTTCATCCTTTCCTGGTGAGAGCATACACTGAAGTTCTTAAAGATTTTTTTGAGAAAGGACTACTAATAAGTCAAGCTTTACTTTCTACCGAAGAGAGATATGAGATGATCCTAGAGTTGATTCCAGACGCAGCTATTGCTTCTGAACTTAGGGGTAGATGGCAAGATAATGGGCGGTCTTCAAGTGCAAAAGAAGATATTAATGTTGTTCGATGGGAACAGCTCAAACATTTGCTGTCAAAGAATAAGGCACCAGGACTGCGAAGGTGTGTTGAAGAGATTGTGTTCTCCTATACTTACCCTAGGCTAGATATGGAGGTTTCGAAGCACATGAATCACTTGCTTAAAGCTCCATTCTGTGTACACCCAAAAACTGGCCGCGTTTGTGTCCCTATTGATCCAAATTGCTGTGAGGAGTTTGATCCTACCATAGTACCTACTCTTTCACAGCTTTTAGACGAGCTTAACGAAAGAGGTCCAAGAGATGATTTAGATGATGAATGGACAGGAACCTCACTTGAGGGTGCCGTCAGCCTTTTCAGAACGTCATTCTTACATCCCCTACTAAAAGCTTGCAAGGAGGAGATAGAAAGTTCCTATAATGCAAAATTGCAGCAGTCAAAAAACTCCTTTAGCTGGTAA	1536	0.4238	MSIEKRELGVELAMSRRIRGRWASSGVLGVLVDLWASFDLVRHSGSAASIQTTEMTKEELQNQNDDMLIDGYEPETPGQKQESHVPSEFNPDHLKVFYGKLFPYADFFKWMSYGNDGKHPGCDPSYISRREFSFSLDNDIFLRFQSFHSAVELENSIKEKCPFKIDIGPVYSVEPTKRHAYTRTGDNVFAPVERELIFDIDMTDYDDVRYCCNGADVCLNCWPLMTISIKVIDTALRDDFGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRAAIADYFRVYKGNENSHKKVSLSGHALHPFLVRAYTEVLKDFFEKGLLISQALLSTEERYEMILELIPDAAIASELRGRWQDNGRSSSAKEDINVVRWEQLKHLLSKNKAPGLRRCVEEIVFSYTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNCCEEFDPTIVPTLSQLLDELNERGPRDDLDDEWTGTSLEGAVSLFRTSFLHPLLKACKEEIESSYNAKLQQSKNSFSW	511

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele24g1791	511	FunFam	DNA primase	81	492	-	-
	Lele24g1791	511	TIGRFAM	primase_sml: putative DNA primase, eukaryotic-type, small subunit	95	452	IPR014052	GO:0003896\|GO:0006269
	Lele24g1791	511	Pfam	DNA primase small subunit	198	431	IPR002755	GO:0003896\|GO:0006269
	Lele24g1791	511	Coils	Coil	50	70	-	-
	Lele24g1791	511	CDD	AE_Prim_S	118	440	IPR014052	GO:0003896\|GO:0006269
	Lele24g1791	511	Gene3D	DNA primase, PRIM domain	80	492	-	-
	Lele24g1791	511	SUPERFAMILY	Prim-pol domain	89	455	-	-
	Lele24g1791	511	PANTHER	DNA PRIMASE SMALL SUBUNIT	81	496	IPR014052	GO:0003896\|GO:0006269

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele24g1791	Lele-ChrLele24	23015893	23023220	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele24g1791	55	511	Core DNA Replication Machinery Family	AT5G41880	62.391	0.0	618

Showing 1 to 1 of 1 entries