Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1784 ATGACCGGTGGGAGGGTCCTCATGGGTTCTCTTACTAATGCTTCCAATTTTGGCCTTTTGCTTCAAAATCAAGCCGCTCCTTCCTCTTCTGACTCTCTCGATGCCTTTTTCCTTTCTGGCTCTTCCTCTTCTTTCCTCGGTTCAAGATCCATGGTGAGTTTTGAAGATGTTAAACCAAGGAAAGGATGTAACCAGTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGACTTGGATGAATACTTTCATCATCCTGAGAAGAAGAGGCGGCTGACCGCTGATCAAGTCCAGTTTCTTGAGAAAAGCTTTGACGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAACCTCGGCAAGTTGCCATTTGGTTCCAGAATCGCCGCGCGCGATGGAAGACAAAACAGCTGGAGAAGGATTTTGAATCTCTGCAGGCTAGCCATGACCGTCTTAAAGCTGACCATGATATCCTTCTCAAGGAGAAATATAAATTAAAAGCCGAGGTTGCAAATCTCACAGAGAAGGTACTTCTTAGAGAGAAACAAGAGGGGAACTACAAGCAGGGCGACACGAGCAAACTTAAAGAACCACGACAAGTGCAAAAGCCCTTGTTTGAGACTACTTCTGATGGTGAAGGCTCCAAAGTCTCTGTTGGAACATGCAAACAGGAAGACATATGTTCATTAAAGAGTGACATATTTAATGCAGAGAGCCCACATTACACTGATGGAGTTCGCTCTGCGCTGCTGGAGCCTGGGGATTCCTCCTATGTATTTGAACATGATCAGTCAGATTTATCCCAGGATGAAGAAGACAACTTGAGCAACATGTTTCCTCAATACATATTTTCAAAGCTTGAAGACGCTGACTACTCCGACCCGTCTGAAAGCTCATGCAGTTTTGGATTACAAGCTGAAGATCATGGCGCCTTTTGGTCCTGGTCTTATTAG 981 0.4465 MTGGRVLMGSLTNASNFGLLLQNQAAPSSSDSLDAFFLSGSSSSFLGSRSMVSFEDVKPRKGCNQSFFSPFDHDENGDEDLDEYFHHPEKKRRLTADQVQFLEKSFDVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDFESLQASHDRLKADHDILLKEKYKLKAEVANLTEKVLLREKQEGNYKQGDTSKLKEPRQVQKPLFETTSDGEGSKVSVGTCKQEDICSLKSDIFNAESPHYTDGVRSALLEPGDSSYVFEHDQSDLSQDEEDNLSNMFPQYIFSKLEDADYSDPSESSCSFGLQAEDHGAFWSWSY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1784 326 Pfam Homeodomain 90 143 IPR001356 GO:0003677
Lele24g1784 326 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Lele24g1784 326 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Lele24g1784 326 CDD homeodomain 90 146 IPR001356 GO:0003677
Lele24g1784 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 66 245 IPR045224 GO:0003700
Lele24g1784 326 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Lele24g1784 326 Coils Coil 144 164 - -
Lele24g1784 326 Gene3D - 84 153 - -
Lele24g1784 326 FunFam Homeobox-leucine zipper protein HAT5 83 147 - -
Lele24g1784 326 PRINTS Lambda-repressor HTH signature 125 141 IPR000047 GO:0003677
Lele24g1784 326 PRINTS Lambda-repressor HTH signature 116 125 IPR000047 GO:0003677
Lele24g1784 326 SMART HOX_1 88 149 IPR001356 GO:0003677
Lele24g1784 326 SUPERFAMILY Homeodomain-like 70 147 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1784 Lele-ChrLele24 22974362 22975960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1784 27 272 Homeobox Transcription Factor Family AT3G01470 40.625 4.31e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele24g1784 Homeodomain 1.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0156 23 988049 989611 Lele24g1784 24 22974362 22975960 ECH
Lele24g1784 24 22974362 22975960 Lele24g1784 24 22974362 22975960 ECH
Lele21g1854 21 26014847 26016447 Lele24g1784 24 22974362 22975960 hybridization
Lele22g1829 22 23327173 23328763 Lele24g1784 24 22974362 22975960 hybridization