Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1780 ATGGGTATGGATTACTATAACATACTGAAAGTGAATCGAAATGCCAGTGAGGACGATTTGAAGAAGGCGTACAAGAGGCTAGCGATGATTTGGCACCCGGACAAGAACCCAGTTAACAAGAGGGAAGCTGAGGCCAAATTCAAGCAAATTTCCGAAGCCTATGACGTTTTGAGCGATCCCCAAAAGCGTCAGATCTATGATCTTTACGGCGAGGAGGCCCTCAAGTCTGGTCAGTTCCCGCCACCTCCGCAATCCTCCTCTTCCATGTCCTCCTCGTCTTCTCGTGCTTACCAGCATTTCCAAAACCAACAACGCCAGCATAGCAACACGTCTTATCGGTTTAATCCTAGGGATGCCGACGACATTTACGCGGAATTTTTTGGGTCGGAGAATGGTGGTGCTGGTGGCGGAGGTGGGAGAAATGGTGCGCATAGGGATGGGTTTTTCAGAACTTCAAATGGTTCGTTTGGTGGAGCGGGGAGGAAGGCTGCGGCGGTGGAGACTCTTTTGCCGTGTAGCTTGGAAGAGCTATACAAAGGTGTCAAGAAGAAGATGAAGATCTCAAGGAATCTCTGTGACGCTCTTGGGAAGGTTCGGAATGTGGAGGAGATATTGACTATTGAGGTGAAACCTGGTTGGAAGAGAGGAACAAAGATTACTTTCCCTGAGAAGGGTAACCAGGAGCCCGGTGTCATTGCAGCAGATCTTGTATTTGTGGTGGATGAGAAACCGCATGCTGGTTATAGGAGGGATGGTAATGATCTGTTAATCAACCAAGAGATTACTCTTCTAGAGTCCCTTACAGGTAAAACCCTAGACCTCACTACCTTGGATGGAAGGAATCTCATGATCCCGCTGATTGATATTGTCAAACCTGGCGCTGATGTCGTCGTCCCTAATGAGGGAATGCCCATTTCAAAAGAGCCTGGGAAGAAGGGCAATTTGAGGATTAAGTTTGACGTTAAGTACCCTTCGAGGCTAACCACAGAGCAGAAATCAGAGCTGATAAGAGTTTTGGGTGGGAATTGA 1029 0.4791 MGMDYYNILKVNRNASEDDLKKAYKRLAMIWHPDKNPVNKREAEAKFKQISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPPQSSSSMSSSSSRAYQHFQNQQRQHSNTSYRFNPRDADDIYAEFFGSENGGAGGGGGRNGAHRDGFFRTSNGSFGGAGRKAAAVETLLPCSLEELYKGVKKKMKISRNLCDALGKVRNVEEILTIEVKPGWKRGTKITFPEKGNQEPGVIAADLVFVVDEKPHAGYRRDGNDLLINQEITLLESLTGKTLDLTTLDGRNLMIPLIDIVKPGADVVVPNEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSELIRVLGGN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1780 342 SMART dnaj_3 3 62 IPR001623 -
Lele24g1780 342 CDD DnaJ_C 166 327 - -
Lele24g1780 342 SUPERFAMILY Chaperone J-domain 3 90 IPR036869 -
Lele24g1780 342 MobiDBLite consensus disorder prediction 74 114 - -
Lele24g1780 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lele24g1780 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lele24g1780 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lele24g1780 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lele24g1780 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lele24g1780 342 Gene3D DnaJ domain 2 139 IPR036869 -
Lele24g1780 342 MobiDBLite consensus disorder prediction 79 114 - -
Lele24g1780 342 FunFam DNAJ heat shock family protein 3 139 - -
Lele24g1780 342 FunFam DNAJ heat shock family protein 244 339 - -
Lele24g1780 342 FunFam Dnaj homolog subfamily b member 162 243 - -
Lele24g1780 342 Gene3D - 245 325 - -
Lele24g1780 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 339 - -
Lele24g1780 342 CDD DnaJ 4 59 IPR001623 -
Lele24g1780 342 Pfam DnaJ C terminal domain 167 324 IPR002939 -
Lele24g1780 342 Gene3D - 164 243 - -
Lele24g1780 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lele24g1780 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 169 245 IPR008971 GO:0006457|GO:0051082
Lele24g1780 342 Pfam DnaJ domain 4 67 IPR001623 -
Lele24g1780 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 334 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1780 Lele-ChrLele24 22937401 22939569 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1780 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 1.03e-09 57.8