Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1754 ATGGGTCGTGGCAATGGCAAGCGCAGGTGGAGAATTTCCTTCCATCGTTCTTCTTCTTCTTCCGCTGATTCCAAGCTCGAACCAAAGGATCCCCCAAAGGAGTTTCTATGTCCAATTTCTGGGACTTTCATGTCCGACCCCGTTGTTGTTGCTTCGGGTCACACATTCGAACGTGTTGCAGTTCAAGTTTGCAGAGATTTGAACTTCTCCCCTAGCCTCGAAGATGGATCTCAACCCGATTTCTCCACGGTCATTCCCAATTTGGCCATCAGAAGTACCATCTCTAATTGGTGCAAAAACTCCGGTGCGGAACTCCCTCGCGCGCCTGAATATAGCTCCGTCGAGAGGGTTGTACGCGTATCAATGGCGTCCCAGCAGGACTCGCCAGATTTAAGGGTTTCTGAGAGGGAATTGCTGAAGGCGGTTGCGAACAACCCGCCGGTGAACACCTCCCACGCTGTCACCGAGTTGGGTCCTCGAGTTAACCACTTCGATTCGGGCTCGTCGGAGGAATCCGTAATCATCGTGCCCAGCCCCGGCACGCCTCTGCATCTAACCACTCATCCCACCTGTTACTCTTCATCGTCGTCTTCTTCCGTAACTGTCGAATCGGAATTTCAAAACCCTAATGGCCCAATTTCCGAAGAAGAGGACAAGTTAGTATCGAAGCTGAAAAGCAAAGAGATTTTCGAGCAAGAAGAAGCCGTTATGTCACTGAGAAGCATCACGAGGAACAGCGAGAGCACCCGAATTTCTCTCTGCACCCCCCGTTTGCTTGACGCCCTACGATCTTTGATCGCCTCCAGGTACTCTGTCGTTCAAGTGAACGCCGTCGCTTCGCTGGTCAATCTCTCCCTCGAGAAATCCAATAAGGTGAAGATCGTTCGGCGGGGATTCGTCCCCTATCTCATTGACGTCTTGAAGAGTGGCTCCGATGAATCGCAGGAACACGCAGCGGGCGCCCTCTTCAGTTTAGCTTTAGACGACGACAACAAAATGGCCATCGGAGTTCTTGGCGCCTTTCAGCCACTCATGCACGCGCTAAGATCCGAGTCGGAGCGTACCCGAAACGACTCGGCGCTCGCGTTGTATCACCTGACCTTGGTACAAAGCAATCGGGTCAAGCTGGTGAGACTCGGGGCAATTCCGACCCTACTCGCGATGTTGAATGCAGGTAAATTGACGAGCCGAGTCTTGCTAATTCTCTGTAATCTAGCTGTGTGTACGGAGGGGCAATCGGCGATGCTGGATGGTAATGCTGTGGAGTGCTTAGTGAGTTTATTAAAGGGGAAAGAGTTGGACTCGGAGTCGACTCGTGAGAACTGTGTTGCTGCGTTGTATGCGCTTAGCCATGGAAGCTTGAGGTTCAGAGCAGTGGCGAAGGAGGCAAGGGTTATGGAGGGGTTGAAGGAGATTGAAGAGAGAGGTACAGAGAGAGCCAGGGAGAAAGCGAGGAGGATAGTGCAGATGATGCGGGCGGGAGAAGACGAAGATGGAAACGGGTCGAATTTTGATTTGGACTCGGGCGGGCTGAACAGGAATCGGTTCAGACGGAGGAATATCAACATTGCGAACTCAACTGCATTTTAG 1590 0.5208 MGRGNGKRRWRISFHRSSSSSADSKLEPKDPPKEFLCPISGTFMSDPVVVASGHTFERVAVQVCRDLNFSPSLEDGSQPDFSTVIPNLAIRSTISNWCKNSGAELPRAPEYSSVERVVRVSMASQQDSPDLRVSERELLKAVANNPPVNTSHAVTELGPRVNHFDSGSSEESVIIVPSPGTPLHLTTHPTCYSSSSSSSVTVESEFQNPNGPISEEEDKLVSKLKSKEIFEQEEAVMSLRSITRNSESTRISLCTPRLLDALRSLIASRYSVVQVNAVASLVNLSLEKSNKVKIVRRGFVPYLIDVLKSGSDESQEHAAGALFSLALDDDNKMAIGVLGAFQPLMHALRSESERTRNDSALALYHLTLVQSNRVKLVRLGAIPTLLAMLNAGKLTSRVLLILCNLAVCTEGQSAMLDGNAVECLVSLLKGKELDSESTRENCVAALYALSHGSLRFRAVAKEARVMEGLKEIEERGTERAREKARRIVQMMRAGEDEDGNGSNFDLDSGGLNRNRFRRRNINIANSTAF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1754 529 Gene3D - 214 492 IPR011989 -
Lele24g1754 529 Pfam U-box domain 32 100 IPR003613 GO:0004842|GO:0016567
Lele24g1754 529 FunFam RING-type E3 ubiquitin transferase 12 104 - -
Lele24g1754 529 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Lele24g1754 529 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Lele24g1754 529 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Lele24g1754 529 CDD RING-Ubox 36 72 - -
Lele24g1754 529 PANTHER U BOX DOMAIN-CONTAINING 24 492 - -
Lele24g1754 529 SUPERFAMILY ARM repeat 219 491 IPR016024 -
Lele24g1754 529 SUPERFAMILY RING/U-box 17 105 - -
Lele24g1754 529 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Lele24g1754 529 SMART arm_5 328 368 IPR000225 GO:0005515
Lele24g1754 529 SMART arm_5 245 286 IPR000225 GO:0005515
Lele24g1754 529 SMART arm_5 287 327 IPR000225 GO:0005515
Lele24g1754 529 SMART arm_5 408 451 IPR000225 GO:0005515
Lele24g1754 529 SMART arm_5 369 407 IPR000225 GO:0005515
Lele24g1754 529 FunFam RING-type E3 ubiquitin transferase 215 491 - -
Lele24g1754 529 MobiDBLite consensus disorder prediction 1 31 - -
Lele24g1754 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1754 Lele-ChrLele24 22742361 22743950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1754 31 529 U-box Gene Family AT5G65200 56.818 0.0 554