Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1741 ATGGCAATGGGCATGAGATCTGATCAGAAGGGGGTACGTATTAGAAGAATTGATCCAACTGGCCCAGAATTTAATGTTTTGAAACCATCAGATGTTATTCTTATCTTTGATGGGGTTGATATTGCCAATGATGGAACAGGATTAAAGTTTATCTTTCCATTTCGCCATGGGGAGCTCATTGGTTTCAGTTATCTTACATCTCAGAAATACACTGGGGATAAAGCAGTAATCGAAGATTTGTTTTTACGACTGTCTCAGTTCCATATCTTCGTTCTGAGTATGGAAAGGATTATGAATGCGAAGCTCCAGTCAAGCTTTTGGATAAACTGCACATTCAATGCGGCAGTTGCCAATGAGCAACTTCTTGTGGTCTCTCAGCGATGTCAGATGTTCTCAAGGGATGAATTGGAACACAAGTTGGTGGATTGTGTTTCAAGAATTCTAGTGCGGATCTGTGGGAAGCCTTTATTACATAGTTTACATCATCTTTTGAAAGTTTCAGTGTTGGATCGTGTTAGGTTCATTCGCCAGCCCAAGCATATCCACGTGTCCAGCAATGAAGAGCCATACGTCGACCTTAAAATTTTGAAGGCTATACCAGCTTCACTCCGTACGGTTGTTCGGTGCGTGCTTAGCTTGTCATTGCAAGACTGCATCACGGTCGCTTCAAATTTTTCCACGCAGACTTTAGAATATTTCTCCCTCATTTCTCAGCTTTGTATGGAGAAGATGGGTACTGACGATCGCAGTTTGGAAGAATTTTTCGAAGAGAAGAAGCGCGTCAGGAACCCTCTTGTCCCCATTGGGGCACTTATTACTGCTGGTGTGCTCACGGCCGGATTAATCAGTTTCAGACAAGGCAATTCTCACTTGGGTCAGAAGTTAATGAGGGCCCGTGTGGTTGTCCAAGGTGCTACAGTGGCCCTTATGGTTGGCACTGCGTACTATTATGGCGAAAATCCTTGGCGATCGAATCGTACTGCTAAGCATGCAAAGAAGGAAGACATAATTGGAAGCTGGTCAGGTGCTAAAGAGAGTGGAAGTGAGGAGAATGTCAGTGAAGAAGGAAGCGGATCAGCTAGTTGGGAGCTGAACACCAAAGCAACATATACAAAATGGCTACTAAAGCAACTTTTGGACAGACATAATCATAGGCAACATTTGGATGACATGCGTGTAAAGAAAAGGAATATGGGACCCCACCATCCAAACTTACCCAAAAAAAGTAGACATTCCTTGCCTCAACAGCAGTTAAGAGATTCAATTAACATCCCTTCAATCGTTCCCAATTACAATGACTTCAGTTCTGTTCTTGGACTCTGTCAAAAGATATCTGTCAAAATGCCCAGCGTTCCACATAAGACTCAGCAAATAGGTGATAGCTTGAAGTACTCATCCCCTGAATCGCCTTTCCCTTCATTCCAAGCTCCTTATTACATTACTATAAATGAGAAAGAAGAACAATCTCCTTCATCAACAGTAAGCAAAATCAGCCCACTTATTCTATTAGTAATAATTGTTCTAGCAGTCATCTTCTTCGTCTATGGCATCGTTCATTTGGTTCTCTGGCTTCTAATGAAAACTCCATCAGCATCTTCACCTCTATCTCATTCCAATAGATTTCCAGAATCCACGCGCTCTCGTGCTTTTCAAAGGCAGCTTCATCATCTCTTTCGCTTACATGATTCAGGATTAGAACAGTCTCTTATAGATGCTCTTCCTGTTTTTTACTACGAAGATGTCTTAGGTTTGAAAGAACCCTTTGACTGTGCTGTGTGTCTCTGTGATTTCTCGGAGCATGACAAGCTGAGATTGTTGCCAATGTGTGGCCATGCTTTCCACATCACTTGTCTTGACACGTGGCTTCTCTCAAACTGTACATGCCCTCTTTGCAGAGCGACAATCTCATCAAGTTCCAATTTTTCCATGGAAAATCCATTATTCAACAATCATAATTCATGGGTTTTGAACAGATTCAAAGGAGATGAAGAGAATGTCAATGGGTGTTCATCAGATACTGAGAGAATTACTGAAAGAAGGGTTCTTTCTGTGAGGCTTGGGAAGTTCAGAAACATTGACGGAGGAGAATTAGAGGTTGGAGAAGAAGAGGGTAGTAGTTGTAATATGGATGGAAGGAGATGTTTCTCCATGGGTTCGTATCAGTATGTGGTGAGTGGTTCAAATCTGCAAGTGGTTCTTTCTGACGTTTCAGAGAATGAGGATGAAGCTGTGGAGGGTAAGAAGATAAGAGAGAGAATTAGAGGTGAGAGCTTCTCGGTGTCAAAGATATGGCTTTGGTCCAACAAGAGCAAGTTTCGAAGCTCTTCTGATGCTGCTGCTTTACCTTGGTTACTGACATATCGTCTCTTCTTTTCCATGAGTCGACGCAGGCTTCCTCGGTATATGAAAGCCGTTCGTATTTGGTACTGA 2430 0.4243 MAMGMRSDQKGVRIRRIDPTGPEFNVLKPSDVILIFDGVDIANDGTGLKFIFPFRHGELIGFSYLTSQKYTGDKAVIEDLFLRLSQFHIFVLSMERIMNAKLQSSFWINCTFNAAVANEQLLVVSQRCQMFSRDELEHKLVDCVSRILVRICGKPLLHSLHHLLKVSVLDRVRFIRQPKHIHVSSNEEPYVDLKILKAIPASLRTVVRCVLSLSLQDCITVASNFSTQTLEYFSLISQLCMEKMGTDDRSLEEFFEEKKRVRNPLVPIGALITAGVLTAGLISFRQGNSHLGQKLMRARVVVQGATVALMVGTAYYYGENPWRSNRTAKHAKKEDIIGSWSGAKESGSEENVSEEGSGSASWELNTKATYTKWLLKQLLDRHNHRQHLDDMRVKKRNMGPHHPNLPKKSRHSLPQQQLRDSINIPSIVPNYNDFSSVLGLCQKISVKMPSVPHKTQQIGDSLKYSSPESPFPSFQAPYYITINEKEEQSPSSTVSKISPLILLVIIVLAVIFFVYGIVHLVLWLLMKTPSASSPLSHSNRFPESTRSRAFQRQLHHLFRLHDSGLEQSLIDALPVFYYEDVLGLKEPFDCAVCLCDFSEHDKLRLLPMCGHAFHITCLDTWLLSNCTCPLCRATISSSSNFSMENPLFNNHNSWVLNRFKGDEENVNGCSSDTERITERRVLSVRLGKFRNIDGGELEVGEEEGSSCNMDGRRCFSMGSYQYVVSGSNLQVVLSDVSENEDEAVEGKKIRERIRGESFSVSKIWLWSNKSKFRSSSDAAALPWLLTYRLFFSMSRRRLPRYMKAVRIWY 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1741 809 MobiDBLite consensus disorder prediction 339 361 - -
Lele24g1741 809 ProSiteProfiles Zinc finger RING-type profile. 590 632 IPR001841 -
Lele24g1741 809 CDD RING-H2_PA-TM-RING 589 632 - -
Lele24g1741 809 SMART ring_2 590 631 IPR001841 -
Lele24g1741 809 SUPERFAMILY RING/U-box 569 638 - -
Lele24g1741 809 MobiDBLite consensus disorder prediction 344 361 - -
Lele24g1741 809 MobiDBLite consensus disorder prediction 395 416 - -
Lele24g1741 809 Pfam Hypoxia induced protein conserved region 263 312 IPR007667 -
Lele24g1741 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 641 IPR013083 -
Lele24g1741 809 FunFam E3 ubiquitin-protein ligase ATL6 553 638 - -
Lele24g1741 809 Gene3D - 263 322 - -
Lele24g1741 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 493 764 - -
Lele24g1741 809 Pfam Ring finger domain 589 632 IPR001841 -
Lele24g1741 809 ProSiteProfiles HIG1 domain profile. 231 328 IPR007667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1741 Lele-ChrLele24 22651524 22663735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1741 485 776 C3H Transcription Factor Family AT2G18650 42.274 3.13e-52 186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1782 22 23006226 23017147 Lele24g1741 24 22651524 22663735 hybridization